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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343032 (21 seq.)
>W1711487717
MKGI01000075
Bacteroidota
Cloacibacterium normanense [MKGI]
72964
72890
-
Thr
GGT
[ENA]
¡û
>W1712082019
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
110294
110366
+
Thr
GGT
[ENA]
¡û
>WENV180283622
OBID01001137
[OBID] metagenome; sludge
7325
7397
+
Thr
GGT
[ENA]
¢þ
>WENV181171467
OEIV010236977
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
344
272
-
Thr
GGT
[ENA]
¢þ
>W141291532
JASZ01000012
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
4689
4761
+
Thr
GGT
[ENA]
¡û
>WENV170010047
APMI01007416
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2523
2597
+
Thr
GGT
[ENA]
¢þ
>WENV170658330
JTFP01087748
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
935
1009
+
Thr
GGT
[ENA]
¢þ
>C191025416
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2197310
2197238
-
Thr
GGT
-
¡û
>C191116455
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1207817
1207889
+
Thr
GGT
-
¡û
>C191120379
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
203987
204059
+
Thr
GGT
-
¡û
>C191211163
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1844770
1844698
-
Thr
GGT
-
¡û
>W141802055
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
1088311
1088385
+
Thr
GGT
[ENA]
¡û
>W1910933654
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475250
475178
-
Thr
GGT
[ENA]
¡û
>C09106201
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
272120
272194
+
Thr
GGT
[Ensembl]
¡û
>W1810304717
PTPZ01000009
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
57859
57787
-
Thr
GGT
[ENA]
¡û
>W1511685321
LFNG01000020
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
26023
26097
+
Thr
GGT
[ENA]
¡û
>W1610095102
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331667
331739
+
Thr
GGT
[ENA]
¡û
>W1710097897
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331667
331739
+
Thr
GGT
[ENA]
¡û
>W1710525004
FNJE01000012
Bacteroidota
Cloacibacterium normanense [FNJE]
72961
72887
-
Thr
GGT
[ENA]
¡û
>W1710554965
FOIX01000004
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
487758
487684
-
Thr
GGT
[ENA]
¡û
>W1710603365
FUYZ01000006
Bacteroidota
Soonwooa buanensis [FUYZ]
141911
141983
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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