This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343039 (27 seq.)
>W1710793240
LJPB01000073
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
6606
6680
+
Arg
CCT
[ENA]
¡û
>W1711327316
MBJU01000114
Gammaproteobacteria
Photorhabdus temperata [MBJU]
29905
29979
+
Arg
CCT
[ENA]
¡û
>W1711487889
MKGR01000002
Gammaproteobacteria
Xenorhabdus thuongxuanensis 30TX1 [MKGR]
18108
18034
-
Arg
CCT
[ENA]
¡û
>C171046395
CP016176
Gammaproteobacteria
Xenorhabdus hominickii ANU1 [CP016176]
222094
222168
+
Arg
CCT
-
¡û
>WENV181515095
OGGW01000645
[OGGW] metagenome; Human gut stool
10776
10850
+
Arg
CCT
[ENA]
¢þ
>W141167030
AXTX01000131
Gammaproteobacteria
Escherichia coli 908658 [AXTX]
121054
120980
-
Arg
CCT
[ENA]
¡û
>W141193786
AYSJ01000002
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
745699
745625
-
Arg
CCT
[ENA]
¡û
>WENV182623585
OJKL01010070
[OJKL] metagenome; faeces
226
152
-
Arg
CCT
[ENA]
¢þ
>WENV182891417
OKSH01001064
[OKSH] human gut metagenome; faeces
8137
8063
-
Arg
CCT
[ENA]
¢þ
>WENV183772193
PPYF01016672
[PPYF] human gut metagenome; stool from patient with Crohn's disease
714707
714781
+
Arg
CCT
[ENA]
¢þ
>WENV183780845
PPYF01187603
[PPYF] human gut metagenome; stool from patient with Crohn's disease
115
41
-
Arg
CCT
[ENA]
¢þ
>WENV183788540
PPYF01370156
[PPYF] human gut metagenome; stool from patient with Crohn's disease
222398
222472
+
Arg
CCT
[ENA]
¢þ
>C181217575
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
1559882
1559808
-
Arg
CCT
-
¡û
>W141519991
JGVH01000022
Gammaproteobacteria
Photorhabdus temperata subsp. temperata Meg1 [JGVH]
89017
88943
-
Arg
CCT
[ENA]
¡û
>C191091065
CP032515
Gammaproteobacteria
Escherichia coli 118UI [CP032515]
2753084
2753158
+
Arg
CCT
-
¡û
>C191099471
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
1439750
1439676
-
Arg
CCT
-
¡û
>W141713769
JMTB01000076
Gammaproteobacteria
Trabulsiella guamensis ATCC 49490 [JMTB]
4091
4165
+
Arg
CCT
[ENA]
¡û
>W1910939871
NJAI01000004
Gammaproteobacteria
Xenorhabdus hominickii DSM 17903 [NJAI]
398893
398819
-
Arg
CCT
[ENA]
¡û
>W1911238014
NSCH01000012
Gammaproteobacteria
Photorhabdus sp. S12-55 [NSCH]
48939
49013
+
Arg
CCT
[ENA]
¡û
>W1911632433
PUJY01000025
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
81957
82031
+
Arg
CCT
[ENA]
¡û
>W1810339481
PUWU01000052
Gammaproteobacteria
Photorhabdus luminescens H3 [PUWU]
18741
18667
-
Arg
CCT
[ENA]
¡û
>W1810339522
PUWV01000028
Gammaproteobacteria
Photorhabdus luminescens H4 [PUWV]
55678
55604
-
Arg
CCT
[ENA]
¡û
>W1810339576
PUWW01000034
Gammaproteobacteria
Photorhabdus luminescens H5 [PUWW]
2895
2969
+
Arg
CCT
[ENA]
¡û
>C151076868
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
194066
194140
+
Arg
CCT
[Ensembl]
¡û
>W1511335035
JQOC01000012
Gammaproteobacteria
Photorhabdus luminescens LN2 [JQOC]
33283
33357
+
Arg
CCT
[ENA]
¡û
>W1511510849
JXSK01000006
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
160369
160295
-
Arg
CCT
[ENA]
¡û
>W1610657244
LJPB01000073
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
6606
6680
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK