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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343270 (111 seq.)
>W1710881433
LMTB01000051
Actinomycetota
Dietzia timorensis [LMTB]
74369
74444
+
Ala
GGC
[ENA]
¡û
>W1710923703
LOBU02000007
Actinomycetota
Amycolatopsis regifaucium [LOBU]
350700
350627
-
Ala
GGC
[ENA]
¡û
>W1711004799
LQMT02000014
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
290382
290455
+
Ala
GGC
[ENA]
¡û
>W1711008065
LQPR01000022
Actinomycetota
Mycobacterium saskatchewanense [LQPR]
123276
123203
-
Ala
GGC
[ENA]
¡û
>W1711277749
LZJE01000266
Actinomycetota
Mycobacterium sp. E136 [LZJE]
15727
15654
-
Ala
GGC
[ENA]
¡û
>W1711298131
MAFC01000004
Actinomycetota
Mycobacterium sp. D16R12 [MAFC]
69297
69222
-
Ala
GGC
[ENA]
¡û
>W1711298246
MAFE01000001
Actinomycetota
Mycobacteroides salmoniphilum [MAFE]
920955
921028
+
Ala
GGC
[ENA]
¡û
>W1711298926
MAFR01000025
Actinomycetota
Mycobacteroides salmoniphilum [MAFR]
6984
7059
+
Ala
GGC
[ENA]
¡û
>W131159147
AQUV01000001
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
7585
7658
+
Ala
GGC
[ENA]
¡û
>W131185110
ARTM01000018
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
31967
32042
+
Ala
GGC
[ENA]
¡û
>W1711662753
MQUQ01000017
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
263915
263988
+
Ala
GGC
[ENA]
¡û
>W1711749237
MUMI01000415
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
32409
32336
-
Ala
GGC
[ENA]
¡û
>W1711765440
MUXN01000025
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
77002
77075
+
Ala
GGC
[ENA]
¡û
>W1711790872
MWIH01000008
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
39454
39527
+
Ala
GGC
[ENA]
¡û
>C171044544
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1175802
1175877
+
Ala
GGC
-
¡û
>C171046300
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
7651216
7651289
+
Ala
GGC
-
¡û
>C171071883
CP018043
Actinomycetota
Mycobacterium sp. WY10 [CP018043]
2665628
2665553
-
Ala
GGC
-
¡û
>W131064605
ANMG01000011
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
77034
77107
+
Ala
GGC
[ENA]
¡û
>W131100443
AOUO01000008
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
9865
9938
+
Ala
GGC
[ENA]
¡û
>W131164066
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
3320863
3320790
-
Ala
GGC
[ENA]
¡û
>W131165104
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
1488269
1488196
-
Ala
GGC
[ENA]
¡û
>W131181769
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
906500
906575
+
Ala
GGC
[ENA]
¡û
>W131202809
ASXG01000154
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
229852
229927
+
Ala
GGC
[ENA]
¡û
>WENV181169520
OEIV010003413
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5524
5449
-
Ala
GGC
[ENA]
¢þ
>W141215941
AZUM01000005
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
283326
283251
-
Ala
GGC
[ENA]
¡û
>W141233339
BAVQ01000043
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
106951
106876
-
Ala
GGC
[ENA]
¡û
>WENV183723931
PEHZ01008581
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
798
725
-
Ala
GGC
[ENA]
¢þ
>WENV183724097
PEHZ01031522
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
200
273
+
Ala
GGC
[ENA]
¢þ
>WENV183724098
PEHZ01031522
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
303
376
+
Ala
GGC
[ENA]
¢þ
>W141451929
JFBM01000038
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
47977
48052
+
Ala
GGC
[ENA]
¡û
>C181019505
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
1104771
1104844
+
Ala
GGC
-
¡û
>C181028453
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
9398530
9398457
-
Ala
GGC
-
¡û
>C181081397
CP023435
Actinomycetota
Mycobacterium sp. PYR15 [CP023435]
1756039
1756114
+
Ala
GGC
-
¡û
>C181107815
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
1224098
1224025
-
Ala
GGC
-
¡û
>C191027344
CP024633
Actinomycetota
Mycobacteroides salmoniphilum DSM 43276 [CP024633]
3295195
3295122
-
Ala
GGC
-
¡û
>W141712098
JMQI01000002
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
106332
106259
-
Ala
GGC
[ENA]
¡û
>W141758989
JNYZ01000026
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
67216
67141
-
Ala
GGC
[ENA]
¡û
>W141773713
JOIQ01000010
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
331258
331333
+
Ala
GGC
[ENA]
¡û
>W09120718
ACEV01000013
Actinomycetota
Streptomyces sp. AA4 [ACEV]
107234
107161
-
Ala
GGC
[ENA]
¡û
>W09124041
ACHJ01000095
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
10453
10526
+
Ala
GGC
[ENA]
¡û
>W09124042
ACHJ01000095
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
10556
10631
+
Ala
GGC
[ENA]
¡û
>W1910182626
BJNB01000005
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
84383
84308
-
Ala
GGC
[ENA]
¡û
>C141001905
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
1574047
1573974
-
Ala
GGC
[Ensembl]
¡û
>W1910438335
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
888652
888577
-
Ala
GGC
[ENA]
¡û
>W1910657633
MASU01000022
Actinomycetota
Prauserella flavalba YIM 121212 [MASU]
50258
50185
-
Ala
GGC
[ENA]
¡û
>W1910657679
MASV01000020
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
3672
3598
-
Ala
GGC
[ENA]
¡û
>W1911071519
NMQT01000008
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
42932
42859
-
Ala
GGC
[ENA]
¡û
>W1911071574
NMQU01000003
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
74680
74753
+
Ala
GGC
[ENA]
¡û
>W1911075246
NMUL01000027
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
70708
70635
-
Ala
GGC
[ENA]
¡û
>W1911578226
PECG01000009
Actinomycetota
Mycobacteroides salmoniphilum DE 4586 [PECG]
177723
177648
-
Ala
GGC
[ENA]
¡û
>W1911578255
PECH01000006
Actinomycetota
Mycobacteroides salmoniphilum DE 4585 [PECH]
265950
265875
-
Ala
GGC
[ENA]
¡û
>W1911578392
PECJ01000014
Actinomycetota
Mycobacteroides salmoniphilum CCUG 62472 [PECJ]
13455
13382
-
Ala
GGC
[ENA]
¡û
>W1911578420
PECK01000003
Actinomycetota
Mycobacteroides salmoniphilum CCUG 60885 [PECK]
278024
277949
-
Ala
GGC
[ENA]
¡û
>W1911578461
PECL01000006
Actinomycetota
Mycobacteroides salmoniphilum CCUG 60884 [PECL]
13973
13900
-
Ala
GGC
[ENA]
¡û
>W1911676769
QHHW01000029
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
43661
43588
-
Ala
GGC
[ENA]
¡û
>W1911676834
QHHX01000008
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
261737
261664
-
Ala
GGC
[ENA]
¡û
>W1911678758
QHJJ01000006
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
385553
385480
-
Ala
GGC
[ENA]
¡û
>W1911678935
QHJM01000040
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
1585
1512
-
Ala
GGC
[ENA]
¡û
>W1911679713
QHKL01000008
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
113891
113964
+
Ala
GGC
[ENA]
¡û
>W1911814687
QZFV01000054
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
7809
7735
-
Ala
GGC
[ENA]
¡û
>W1810058361
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
865643
865717
+
Ala
GGC
[ENA]
¡û
>W1810154976
PIZU01000029
Actinomycetota
Mycobacterium sp. QGD 101 [PIZU]
60066
60139
+
Ala
GGC
[ENA]
¡û
>W1810173271
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
1320294
1320367
+
Ala
GGC
[ENA]
¡û
>W1810237650
PPHG01000005
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
99028
98955
-
Ala
GGC
[ENA]
¡û
>W1810254981
PQIA01000047
Actinomycetota
Amycolatopsis circi DSM 45561 [PQIA]
14118
14191
+
Ala
GGC
[ENA]
¡û
>W1810356954
PVNH01000014
Actinomycetota
Prauserella shujinwangii CGMCC 4.7125 [PVNH]
69244
69319
+
Ala
GGC
[ENA]
¡û
>W1810477504
QAOW01000001
Actinomycetota
Rhodococcus sp. OK519 [QAOW]
822287
822360
+
Ala
GGC
[ENA]
¡û
>W1810608737
QGTN01000013
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
61012
61085
+
Ala
GGC
[ENA]
¡û
>W1810658298
QJJF01000006
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
50550
50476
-
Ala
GGC
[ENA]
¡û
>W1810659101
QJJU01000011
Actinomycetota
Mycolicibacterium moriokaense GAS496 [QJJU]
25429
25504
+
Ala
GGC
[ENA]
¡û
>C151012248
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2221863
2221790
-
Ala
GGC
[Ensembl]
¡û
>C151012249
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2221558
2221485
-
Ala
GGC
[Ensembl]
¡û
>C151040851
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
6760234
6760307
+
Ala
GGC
[Ensembl]
¡û
>C11100932
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
1565545
1565472
-
Ala
GGC
-
¡û
>W1511360241
JRZE01000002
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
400144
400069
-
Ala
GGC
[ENA]
¡û
>W1511509640
JXRD01000051
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
41046
41119
+
Ala
GGC
[ENA]
¡û
>W11164176
AFIZ01000043
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
8923
8998
+
Ala
GGC
[ENA]
¡û
>W11164177
AFIZ01000043
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
10900
10975
+
Ala
GGC
[ENA]
¡û
>W11181204
AGIU01000026
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
6235
6310
+
Ala
GGC
[ENA]
¡û
>C121015493
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
1574087
1574014
-
Ala
GGC
-
¡û
>W1610068709
BCRN01000028
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
32856
32929
+
Ala
GGC
[ENA]
¡û
>W1610078438
BDAW01000099
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
4347
4272
-
Ala
GGC
[ENA]
¡û
>W1610079143
BDBK01000011
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
9731
9656
-
Ala
GGC
[ENA]
¡û
>W1610079622
BDBU01000005
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
62531
62456
-
Ala
GGC
[ENA]
¡û
>W1610079623
BDBU01000005
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
21864
21789
-
Ala
GGC
[ENA]
¡û
>W1610080218
BDCE01000133
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
1870
1945
+
Ala
GGC
[ENA]
¡û
>W1610080219
BDCE01000135
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
2161
2234
+
Ala
GGC
[ENA]
¡û
>W121010573
AGJI02000002
Actinomycetota
Saccharomonospora glauca K62 [AGJI]
544929
545002
+
Ala
GGC
[ENA]
¡û
>W121036291
AHLY01000002
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
177546
177619
+
Ala
GGC
[ENA]
¡û
>W121045502
AICV01000012
Actinomycetota
Saccharomonospora xinjiangensis XJ-54 [AICV]
1251876
1251801
-
Ala
GGC
[ENA]
¡û
>C131003649
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
1659236
1659163
-
Ala
GGC
[Ensembl]
¡û
>W1610743779
LMTB01000051
Actinomycetota
Dietzia timorensis [LMTB]
74369
74444
+
Ala
GGC
[ENA]
¡û
>W1610855444
LQMT01000224
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
115581
115654
+
Ala
GGC
[ENA]
¡û
>W1611037034
LZJE01000266
Actinomycetota
Mycobacterium sp. E136 [LZJE]
15727
15654
-
Ala
GGC
[ENA]
¡û
>W1710066082
BCRN01000028
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
32856
32929
+
Ala
GGC
[ENA]
¡û
>W1710076997
BDAW01000099
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
4347
4272
-
Ala
GGC
[ENA]
¡û
>W1710077702
BDBK01000011
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
9731
9656
-
Ala
GGC
[ENA]
¡û
>W1710078181
BDBU01000005
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
62531
62456
-
Ala
GGC
[ENA]
¡û
>W1710078182
BDBU01000005
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
21864
21789
-
Ala
GGC
[ENA]
¡û
>W1710078777
BDCE01000133
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
1870
1945
+
Ala
GGC
[ENA]
¡û
>W1710078778
BDCE01000135
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
2161
2234
+
Ala
GGC
[ENA]
¡û
>W1710512175
FMZE01000016
Actinomycetota
Prauserella marina [FMZE]
7088
7015
-
Ala
GGC
[ENA]
¡û
>W1710535499
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
23139
23066
-
Ala
GGC
[ENA]
¡û
>W1710536154
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
2348832
2348907
+
Ala
GGC
[ENA]
¡û
>W1710538227
FNUJ01000010
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
53140
53213
+
Ala
GGC
[ENA]
¡û
>W1710549028
FOEF01000014
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
201444
201519
+
Ala
GGC
[ENA]
¡û
>W1710563388
FOPQ01000005
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
346120
346047
-
Ala
GGC
[ENA]
¡û
>W1710565904
FORP01000009
Actinomycetota
Amycolatopsis sacchari [FORP]
175368
175295
-
Ala
GGC
[ENA]
¡û
>W1710571669
FOWC01000004
Actinomycetota
Amycolatopsis rubida [FOWC]
335966
336041
+
Ala
GGC
[ENA]
¡û
>W1710572507
FOWS01000005
Actinomycetota
Saccharomonospora viridis [FOWS]
38353
38428
+
Ala
GGC
[ENA]
¡û
>W1710773692
LIWC01000005
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
295291
295364
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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