This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343342 (139 seq.)
>W1711136989
LVAU01000140
Bacillota
Clostridiales bacterium Firm_15 [LVAU]
766
691
-
Thr
GGT
[ENA]
¡û
>W1712035742
NFHA01000030
Bacillota
Flavonifractor sp. An91 [NFHA]
780
855
+
Thr
GGT
[ENA]
¡û
>WENV180303808
OBJF01116446
[OBJF] human gut metagenome; feces
19
94
+
Thr
GGT
[ENA]
¡û
>WENV180468978
OBYM01000152
[OBYM] human gut metagenome; faeces
19976
19901
-
Thr
GGT
[ENA]
¡û
>WENV180469034
OBYM01000241
[OBYM] human gut metagenome; faeces
1130
1055
-
Thr
GGT
[ENA]
¡û
>WENV180517652
OCHD01001101
[OCHD] human gut metagenome; human gut
223
298
+
Thr
GGT
[ENA]
¡û
>WENV180537227
OCHN01196536
[OCHN] human gut metagenome; human gut
37
112
+
Thr
GGT
[ENA]
¡û
>WENV180564364
OCLD01111558
[OCLD] human gut metagenome; human gut
101
176
+
Thr
GGT
[ENA]
¡û
>WENV180620454
OCQB01084738
[OCQB] human gut metagenome; human gut
210
285
+
Thr
GGT
[ENA]
¡û
>WENV180670199
OCVV011296509
[OCVV] gut metagenome; gut
2029
2104
+
Thr
GGT
[ENA]
¡û
>WENV180670200
OCVV011296509
[OCVV] gut metagenome; gut
2029
2104
+
Thr
GGT
[ENA]
¡û
>WENV180683505
OCVV012842452
[OCVV] gut metagenome; gut
121
46
-
Thr
GGT
[ENA]
¡û
>WENV180683506
OCVV012842452
[OCVV] gut metagenome; gut
121
46
-
Thr
GGT
[ENA]
¡û
>WENV180771885
ODIH01013394
[ODIH] human metagenome; G_DNA_Stool
717
642
-
Thr
GGT
[ENA]
¡û
>WENV180799570
ODJC01011064
[ODJC] human metagenome; G_DNA_Stool
72
147
+
Thr
GGT
[ENA]
¡û
>WENV180841264
ODKJ01092559
[ODKJ] human metagenome; G_DNA_Stool
18
93
+
Thr
GGT
[ENA]
¡û
>WENV181089241
OEBA01017499
[OEBA] human metagenome; G_DNA_Stool
1922
1847
-
Thr
GGT
[ENA]
¡û
>WENV181245298
OFFI01074023
[OFFI] mouse gut metagenome; faeces
84
159
+
Thr
GGT
[ENA]
¡û
>WENV181261350
OFFX01024780
[OFFX] mouse gut metagenome; faeces
21
96
+
Thr
GGT
[ENA]
¡û
>WENV181265324
OFGA01064532
[OFGA] mouse gut metagenome; faeces
747
672
-
Thr
GGT
[ENA]
¡û
>WENV181271509
OFGF01050530
[OFGF] mouse gut metagenome; faeces
68
143
+
Thr
GGT
[ENA]
¡û
>WENV181423875
OGCO01023787
[OGCO] human gut metagenome; human gut
76
1
-
Thr
GGT
[ENA]
¡û
>WENV181426165
OGCQ01003155
[OGCQ] human gut metagenome; human gut
1513
1438
-
Thr
GGT
[ENA]
¡û
>WENV181436893
OGDF01038633
[OGDF] human gut metagenome; human gut
866
941
+
Thr
GGT
[ENA]
¡û
>WENV181441941
OGDN01032523
[OGDN] human gut metagenome; human gut
261
336
+
Thr
GGT
[ENA]
¡û
>WENV181607942
OGLM01038364
[OGLM] metagenome; Human gut stool
112
37
-
Thr
GGT
[ENA]
¡û
>WENV181621979
OGMF01026720
[OGMF] metagenome; Human gut stool
1549
1624
+
Thr
GGT
[ENA]
¡û
>WENV181622133
OGMF01051549
[OGMF] metagenome; Human gut stool
1050
975
-
Thr
GGT
[ENA]
¡û
>WENV181674220
OGOO01031135
[OGOO] human gut metagenome; faeces
1483
1408
-
Thr
GGT
[ENA]
¡û
>WENV181728541
OGQA01096706
[OGQA] human gut metagenome; faeces
61
136
+
Thr
GGT
[ENA]
¡û
>WENV181967728
OGZV01018334
[OGZV] human gut metagenome; faeces
568
643
+
Thr
GGT
[ENA]
¡û
>WENV181988255
OHAN01006854
[OHAN] human gut metagenome; faeces
908
833
-
Thr
GGT
[ENA]
¡û
>WENV181998354
OHAU01059019
[OHAU] human gut metagenome; faeces
647
572
-
Thr
GGT
[ENA]
¡û
>WENV182009782
OHBJ01048068
[OHBJ] human gut metagenome; faeces
232
307
+
Thr
GGT
[ENA]
¡û
>WENV182013149
OHBN01010973
[OHBN] human gut metagenome; feces
7
82
+
Thr
GGT
[ENA]
¡û
>WENV182042148
OHDN01001037
[OHDN] human gut metagenome; feces
10510
10585
+
Thr
GGT
[ENA]
¡û
>WENV182042149
OHDN01001037
[OHDN] human gut metagenome; feces
10835
10910
+
Thr
GGT
[ENA]
¡û
>WENV182053938
OHEJ01006486
[OHEJ] human gut metagenome; feces
105
180
+
Thr
GGT
[ENA]
¡û
>WENV182058527
OHEP01017181
[OHEP] human gut metagenome; feces
196
271
+
Thr
GGT
[ENA]
¡û
>WENV182078570
OHGA01000919
[OHGA] human gut metagenome; feces
3677
3602
-
Thr
GGT
[ENA]
¡û
>WENV182078571
OHGA01000919
[OHGA] human gut metagenome; feces
3351
3276
-
Thr
GGT
[ENA]
¡û
>WENV182090185
OHHB01024122
[OHHB] human gut metagenome; feces
170
245
+
Thr
GGT
[ENA]
¡û
>WENV182111618
OHIS01001043
[OHIS] human gut metagenome; feces
2629
2704
+
Thr
GGT
[ENA]
¡û
>WENV182124706
OHJR01004059
[OHJR] human gut metagenome; feces
2136
2211
+
Thr
GGT
[ENA]
¡û
>WENV182142017
OHKT01029047
[OHKT] human gut metagenome; feces
212
287
+
Thr
GGT
[ENA]
¡û
>WENV182176954
OHNJ01000846
[OHNJ] human gut metagenome; feces
2985
3060
+
Thr
GGT
[ENA]
¡û
>WENV182176955
OHNJ01000846
[OHNJ] human gut metagenome; feces
3311
3386
+
Thr
GGT
[ENA]
¡û
>WENV182192362
OHOZ01005975
[OHOZ] human gut metagenome; feces
506
581
+
Thr
GGT
[ENA]
¡û
>WENV182200439
OHPL01000591
[OHPL] human gut metagenome; feces
12229
12304
+
Thr
GGT
[ENA]
¡û
>WENV182211782
OHQF01004473
[OHQF] human gut metagenome; feces
4541
4466
-
Thr
GGT
[ENA]
¡û
>WENV182219626
OHQR01004196
[OHQR] human gut metagenome; feces
3219
3144
-
Thr
GGT
[ENA]
¡û
>WENV182231723
OHRM01025017
[OHRM] human gut metagenome; feces
99
174
+
Thr
GGT
[ENA]
¡û
>WENV182238315
OHRZ01000140
[OHRZ] human gut metagenome; feces
13814
13739
-
Thr
GGT
[ENA]
¡û
>WENV182250315
OHSS01001292
[OHSS] human gut metagenome; feces
2024
2099
+
Thr
GGT
[ENA]
¡û
>WENV182315420
OHYB01035585
[OHYB] human gut metagenome; feces
104
29
-
Thr
GGT
[ENA]
¡û
>WENV182369847
OICR01051670
[OICR] human gut metagenome; feces
432
357
-
Thr
GGT
[ENA]
¡û
>WENV182466720
OIOR01014213
[OIOR] human gut metagenome; human gut
296
371
+
Thr
GGT
[ENA]
¡û
>WENV182512377
OIWL01003964
[OIWL] human gut metagenome; faeces
3386
3311
-
Thr
GGT
[ENA]
¡û
>WENV182512533
OIWL01007694
[OIWL] human gut metagenome; faeces
3794
3869
+
Thr
GGT
[ENA]
¡û
>WENV182513882
OIWM01002010
[OIWM] human gut metagenome; faeces
11050
11125
+
Thr
GGT
[ENA]
¡û
>WENV182607573
OJJU01016798
[OJJU] metagenome; faeces
1376
1301
-
Thr
GGT
[ENA]
¡û
>WENV182631972
OJKW01032258
[OJKW] metagenome; faeces
328
403
+
Thr
GGT
[ENA]
¡û
>WENV182635587
OJKY01097651
[OJKY] metagenome; faeces
347
422
+
Thr
GGT
[ENA]
¡û
>WENV182649978
OJMG01029801
[OJMG] human gut metagenome; feces
951
1026
+
Thr
GGT
[ENA]
¡û
>WENV182714418
OJPH01000457
[OJPH] human gut metagenome; stool sample
14530
14455
-
Thr
GGT
[ENA]
¡û
>WENV182747286
OJQV01001021
[OJQV] human gut metagenome; stool sample
3839
3764
-
Thr
GGT
[ENA]
¡û
>WENV182748794
OJQX01000433
[OJQX] human gut metagenome; stool sample
11432
11507
+
Thr
GGT
[ENA]
¡û
>WENV182884577
OKSC01000478
[OKSC] human gut metagenome; faeces
45838
45913
+
Thr
GGT
[ENA]
¡û
>WENV182911585
OKTL01002170
[OKTL] human gut metagenome; feces
4513
4438
-
Thr
GGT
[ENA]
¡û
>WENV183041013
OLGD01000278
[OLGD] human gut metagenome; faeces
54340
54265
-
Thr
GGT
[ENA]
¡û
>WENV183078907
OLIX01006521
[OLIX] human gut metagenome; feces
2571
2646
+
Thr
GGT
[ENA]
¡û
>WENV183096303
OLND01041119
[OLND] human gut metagenome; faeces
4
79
+
Thr
GGT
[ENA]
¡û
>WENV183097720
OLNE01008845
[OLNE] human gut metagenome; faeces
4236
4161
-
Thr
GGT
[ENA]
¡û
>WENV183113977
OLNP01073690
[OLNP] human gut metagenome; faeces
528
453
-
Thr
GGT
[ENA]
¡û
>WENV183124370
OLNW01011823
[OLNW] human gut metagenome; faeces
397
472
+
Thr
GGT
[ENA]
¡û
>WENV183130771
OLOA01005138
[OLOA] human gut metagenome; faeces
8596
8521
-
Thr
GGT
[ENA]
¡û
>WENV183139204
OLOI01000138
[OLOI] human gut metagenome; faeces
1174
1099
-
Thr
GGT
[ENA]
¡û
>WENV183146829
OLOM01026700
[OLOM] human gut metagenome; faeces
34
109
+
Thr
GGT
[ENA]
¡û
>WENV183158192
OLOT01021962
[OLOT] human gut metagenome; faeces
237
312
+
Thr
GGT
[ENA]
¡û
>WENV183161709
OLOV01014148
[OLOV] human gut metagenome; faeces
2451
2526
+
Thr
GGT
[ENA]
¡û
>WENV183162630
OLOW01001079
[OLOW] human gut metagenome; faeces
14892
14967
+
Thr
GGT
[ENA]
¡û
>WENV183170048
OLPA01027404
[OLPA] human gut metagenome; faeces
1531
1456
-
Thr
GGT
[ENA]
¡û
>WENV183172419
OLPC01010294
[OLPC] human gut metagenome; faeces
157
232
+
Thr
GGT
[ENA]
¡û
>WENV183180828
OLPI01001301
[OLPI] human gut metagenome; faeces
12761
12836
+
Thr
GGT
[ENA]
¡û
>WENV183185716
OLPN01024952
[OLPN] human gut metagenome; faeces
834
759
-
Thr
GGT
[ENA]
¡û
>WENV183191202
OLPR01005909
[OLPR] human gut metagenome; faeces
3060
3135
+
Thr
GGT
[ENA]
¡û
>WENV183199021
OLPV01010766
[OLPV] human gut metagenome; faeces
1678
1603
-
Thr
GGT
[ENA]
¡û
>WENV183199022
OLPV01010766
[OLPV] human gut metagenome; faeces
1353
1278
-
Thr
GGT
[ENA]
¡û
>WENV183200346
OLPW01001533
[OLPW] human gut metagenome; faeces
76
1
-
Thr
GGT
[ENA]
¡û
>WENV183204344
OLPY01056364
[OLPY] human gut metagenome; faeces
145
70
-
Thr
GGT
[ENA]
¡û
>WENV183205914
OLPZ01075657
[OLPZ] human gut metagenome; faeces
269
194
-
Thr
GGT
[ENA]
¡û
>WENV183209232
OLQB01027324
[OLQB] human gut metagenome; faeces
1044
969
-
Thr
GGT
[ENA]
¡û
>WENV183213569
OLQD01094038
[OLQD] human gut metagenome; faeces
491
416
-
Thr
GGT
[ENA]
¡û
>WENV183220205
OLQK01023935
[OLQK] human gut metagenome; faeces
782
857
+
Thr
GGT
[ENA]
¡û
>WENV183226935
OLQO01034794
[OLQO] human gut metagenome; faeces
362
287
-
Thr
GGT
[ENA]
¡û
>WENV183234479
OLQV01043772
[OLQV] human gut metagenome; faeces
259
184
-
Thr
GGT
[ENA]
¡û
>WENV183236951
OLQX01044729
[OLQX] human gut metagenome; faeces
489
414
-
Thr
GGT
[ENA]
¡û
>WENV183248403
OLRF01088835
[OLRF] human gut metagenome; faeces
488
413
-
Thr
GGT
[ENA]
¡û
>WENV183249611
OLRG01005849
[OLRG] human gut metagenome; faeces
5220
5295
+
Thr
GGT
[ENA]
¡û
>WENV183268759
OLRU01021066
[OLRU] human gut metagenome; faeces
36
111
+
Thr
GGT
[ENA]
¡û
>WENV183276529
OLRZ01010513
[OLRZ] human gut metagenome; faeces
415
340
-
Thr
GGT
[ENA]
¡û
>WENV183281193
OLSB01045803
[OLSB] human gut metagenome; faeces
797
722
-
Thr
GGT
[ENA]
¡û
>WENV183284884
OLSD01104078
[OLSD] human gut metagenome; faeces
292
217
-
Thr
GGT
[ENA]
¡û
>WENV183294032
OLSK01004522
[OLSK] human gut metagenome; faeces
1781
1706
-
Thr
GGT
[ENA]
¡û
>WENV183295847
OLSL01004555
[OLSL] human gut metagenome; faeces
2064
2139
+
Thr
GGT
[ENA]
¡û
>WENV183295879
OLSL01004966
[OLSL] human gut metagenome; faeces
6503
6578
+
Thr
GGT
[ENA]
¡û
>WENV183330218
OLWB01004051
[OLWB] human gut metagenome; faeces
6789
6864
+
Thr
GGT
[ENA]
¡û
>WENV183332651
OLWD01002935
[OLWD] human gut metagenome; feces
27
102
+
Thr
GGT
[ENA]
¡û
>WENV183334659
OLWF01004873
[OLWF] human gut metagenome; feces
2047
1972
-
Thr
GGT
[ENA]
¡û
>WENV183336074
OLWH01000541
[OLWH] human gut metagenome; feces
16423
16498
+
Thr
GGT
[ENA]
¡û
>WENV183348907
OLWV01004253
[OLWV] human gut metagenome; feces
2026
1951
-
Thr
GGT
[ENA]
¡û
>WENV183349979
OLWW01013520
[OLWW] human gut metagenome; feces
120
195
+
Thr
GGT
[ENA]
¡û
>WENV183353977
OLXB01005367
[OLXB] human gut metagenome; feces
2
77
+
Thr
GGT
[ENA]
¡û
>WENV183355577
OLXD01007478
[OLXD] human gut metagenome; feces
2117
2192
+
Thr
GGT
[ENA]
¡û
>WENV183367051
OLXP01005009
[OLXP] human gut metagenome; feces
194
269
+
Thr
GGT
[ENA]
¡û
>WENV183385328
OLYN01064812
[OLYN] human gut metagenome; feces
534
609
+
Thr
GGT
[ENA]
¡û
>WENV183390668
OLZC01000559
[OLZC] human gut metagenome; feces
7335
7260
-
Thr
GGT
[ENA]
¡û
>WENV183401025
OLZT01000580
[OLZT] human gut metagenome; feces
5009
5084
+
Thr
GGT
[ENA]
¡û
>WENV183406981
OMAB01016976
[OMAB] human gut metagenome; feces
111
186
+
Thr
GGT
[ENA]
¡û
>WENV183420535
OMBA01007676
[OMBA] human gut metagenome; feces
1513
1438
-
Thr
GGT
[ENA]
¡û
>WENV183464238
OMDZ01002220
[OMDZ] human gut metagenome; feces
7566
7491
-
Thr
GGT
[ENA]
¡û
>WENV183467246
OMED01000170
[OMED] human gut metagenome; feces
36673
36748
+
Thr
GGT
[ENA]
¡û
>WENV183479063
OMFF01001053
[OMFF] human gut metagenome; feces
969
1044
+
Thr
GGT
[ENA]
¡û
>WENV183519966
OMNT01003685
[OMNT] human gut metagenome; faeces
35
110
+
Thr
GGT
[ENA]
¡û
>WENV183602459
OODJ01064936
[OODJ] human gut metagenome; human gut
623
548
-
Thr
GGT
[ENA]
¡û
>WENV183768913
PPYE01411577
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
550
625
+
Thr
GGT
[ENA]
¡û
>WENV183770838
PPYE01449063
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1108
1033
-
Thr
GGT
[ENA]
¡û
>WENV170776347
LXOW01157507
[LXOW] bovine gut metagenome; Cow rumen
355
430
+
Thr
GGT
[ENA]
¡û
>W2010331361
CACXDT010000203
Bacillota
Ruminococcaceae bacterium [CACXDT]
234
159
-
Thr
GGT
[ENA]
¡û
>W2010341197
CADAMR010000018
Bacillota
Ruminococcaceae bacterium [CADAMR]
2334
2259
-
Thr
GGT
[ENA]
¡û
>W2010343924
CADBIF010000053
Bacillota
Ruminococcaceae bacterium [CADBIF]
18027
18102
+
Thr
GGT
[ENA]
¡û
>W2110221222
JACJIW010000082
Bacillota
Flavonifractor plautii An856 [JACJIW]
546
621
+
Thr
GGT
[ENA]
¡û
>W2110258569
JACSNS010000033
Bacillota
Oscillibacter valericigenes An563 [JACSNS]
26957
26882
-
Thr
GGT
[ENA]
¡û
>W2110258856
JACSNX010000040
Bacillota
Oscillibacter valericigenes An411 [JACSNX]
5702
5777
+
Thr
GGT
[ENA]
¡û
>C211259859
CP069418
Bacillota
Clostridiales bacterium FE2011 [CP069418]
3228513
3228588
+
Thr
GGT
-
¡û
>C211259881
CP069419
Bacillota
Clostridiales bacterium XBB3002 [CP069419]
508876
508951
+
Thr
GGT
-
¡û
>C211264154
CP069593
Bacillota
Clostridiales bacterium FE2010 [CP069593]
756253
756328
+
Thr
GGT
-
¡û
>W1610948109
LVAU01000140
Bacillota
Clostridiales bacterium Firm_15 [LVAU]
766
691
-
Thr
GGT
[ENA]
¡û
>W1710606649
FWXZ01000001
Bacillota
Aristaeella lactis bacterium [FWXZ]
814915
814840
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK