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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343492 (35 seq.)
>W1711249809
LYMA02000046
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
14090
14164
+
Glu
TTC
[ENA]
¡û
>W1711249843
LYMB01000161
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
6232
6158
-
Glu
TTC
[ENA]
¡û
>W1711250207
LYMT01000140
Alphaproteobacteria
Orientia tsutsugamushi [LYMT]
7050
7124
+
Glu
TTC
[ENA]
¡û
>W131242257
CANJ01000004
Alphaproteobacteria
Occidentia massiliensis Os18 [CANJ]
61998
62072
+
Glu
TTC
[ENA]
¡û
>WENV001198
AACY020036071
Marine microbial communities from Global Ocean Sampling (GOS)
547
623
+
Glu
TTC
[ENA]
>C015506
AM494475
Alphaproteobacteria
Orientia tsutsugamushi str. Boryong [AM494475]
1383217
1383291
+
Glu
TTC
[Ensembl]
¡û
>w021467
AAVR01000001
Alphaproteobacteria
Rickettsia massiliae MTU5 [AAVR]
24029
24103
+
Glu
TTC
[ENA]
¡û
>WENV181841995
OGVS01021491
[OGVS] freshwater metagenome; freshwater
469
395
-
Glu
TTC
[ENA]
¢þ
>C08008237
CP000683
Alphaproteobacteria
Rickettsia massiliae MTU5 [CP000683]
24029
24103
+
Glu
TTC
[Ensembl]
¡û
>C08007138
AP008981
Alphaproteobacteria
Orientia tsutsugamushi str. Ikeda [AP008981]
863627
863556
-
Glu
TTC
[Ensembl]
¡û
>WENV170646738
JQIA01002484
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
4324
4250
-
Glu
TTC
[ENA]
¢þ
>WENV170998109
MWWI01017007
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
365
439
+
Glu
TTC
[ENA]
¢þ
>C181203892
LS398547
Alphaproteobacteria
Orientia tsutsugamushi [LS398547]
1269388
1269462
+
Glu
TTC
-
¡û
>C181203936
LS398548
Alphaproteobacteria
Orientia tsutsugamushi [LS398548]
939379
939305
-
Glu
TTC
-
¡û
>C181203970
LS398549
Alphaproteobacteria
Orientia tsutsugamushi [LS398549]
642082
642008
-
Glu
TTC
-
¡û
>C181203995
LS398550
Alphaproteobacteria
Orientia tsutsugamushi [LS398550]
1889410
1889336
-
Glu
TTC
-
¡û
>C181204017
LS398551
Alphaproteobacteria
Orientia tsutsugamushi str. Gilliam [LS398551]
1510775
1510849
+
Glu
TTC
-
¡û
>C181204046
LS398552
Alphaproteobacteria
Orientia tsutsugamushi [LS398552]
876862
876936
+
Glu
TTC
-
¡û
>W1911541425
OOHR01000013
Alphaproteobacteria
Orientia tsutsugamushi [OOHR]
30919
30845
-
Glu
TTC
[ENA]
¡û
>W1911544930
OUNA01000006
Alphaproteobacteria
Orientia tsutsugamushi [OUNA]
107316
107390
+
Glu
TTC
[ENA]
¡û
>C151025113
CP007481
Alphaproteobacteria
Neorickettsia helminthoeca str. Oregon [CP007481]
323178
323106
-
Glu
TTC
[Ensembl]
¡û
>W1511574108
LANM01000001
Alphaproteobacteria
Orientia tsutsugamushi str. Karp [LANM]
65100
65026
-
Glu
TTC
[ENA]
¡û
>W1511574137
LANN01000001
Alphaproteobacteria
Orientia tsutsugamushi str. Kato PP [LANN]
82946
82872
-
Glu
TTC
[ENA]
¡û
>W1511574169
LANO01000003
Alphaproteobacteria
Orientia tsutsugamushi str. Gilliam [LANO]
66834
66908
+
Glu
TTC
[ENA]
¡û
>W1511574197
LANP01000004
Alphaproteobacteria
Candidatus Orientia mediorientalis str. Fuller [LANP]
24276
24202
-
Glu
TTC
[ENA]
¡û
>W1511574505
LANY01000001
Alphaproteobacteria
Orientia tsutsugamushi str. TA763 [LANY]
13815
13889
+
Glu
TTC
[ENA]
¡û
>W1511574539
LANZ01000002
Alphaproteobacteria
Orientia tsutsugamushi str. UT76 [LANZ]
37544
37618
+
Glu
TTC
[ENA]
¡û
>W1511574609
LAOA01000028
Alphaproteobacteria
Orientia tsutsugamushi str. TA716 [LAOA]
15208
15282
+
Glu
TTC
[ENA]
¡û
>W1511574680
LAOC01000001
Alphaproteobacteria
Rickettsia rhipicephali str. Ect [LAOC]
544699
544625
-
Glu
TTC
[ENA]
¡û
>W1511575103
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
300603
300529
-
Glu
TTC
[ENA]
¡û
>W1511575147
LAOR01000013
Alphaproteobacteria
Orientia tsutsugamushi str. UT144 [LAOR]
5079
5005
-
Glu
TTC
[ENA]
¡û
>C121010804
CP003319
Alphaproteobacteria
Rickettsia massiliae str. AZT80 [CP003319]
47376
47450
+
Glu
TTC
[Ensembl]
¡û
>W1611016783
LYMA01000046
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
14090
14164
+
Glu
TTC
[ENA]
¡û
>W1611016817
LYMB01000161
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
6232
6158
-
Glu
TTC
[ENA]
¡û
>W1611016948
LYMT01000140
Alphaproteobacteria
Orientia tsutsugamushi [LYMT]
7050
7124
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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