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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34351 (22 seq.)
>W1711054744
LRUB01000013
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
80022
80111
+
Ser
CGA
[ENA]
¡û
>W1711257934
LYUD01000045
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17036
16947
-
Ser
CGA
[ENA]
¡û
>C171036216
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
1540705
1540794
+
Ser
CGA
-
¡û
>C171120272
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
2085392
2085481
+
Ser
CGA
-
¡û
>C171120330
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
2114224
2114313
+
Ser
CGA
-
¡û
>WENV170963911
MRWG01001321
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9948
10037
+
Ser
CGA
[ENA]
¢þ
>W1910007968
BDES01000049
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
164646
164557
-
Ser
CGA
[ENA]
¡û
>W1910008081
BDEU01000066
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
7634
7545
-
Ser
CGA
[ENA]
¡û
>W1910008132
BDEV01000072
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
7310
7221
-
Ser
CGA
[ENA]
¡û
>W1910008240
BDEX01000069
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
7532
7443
-
Ser
CGA
[ENA]
¡û
>C141012393
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
808921
808832
-
Ser
CGA
[Ensembl]
¡û
>W1910657442
MAPU01000005
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
151910
151999
+
Ser
CGA
[ENA]
¡û
>W1910753202
MKHC01000002
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
131085
131174
+
Ser
CGA
[ENA]
¡û
>C10100733
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2046118
2046029
-
Ser
CGA
[Ensembl]
¡û
>C10100790
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2048758
2048669
-
Ser
CGA
[Ensembl]
¡û
>C10100847
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2046100
2046011
-
Ser
CGA
[Ensembl]
¡û
>C10100904
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2046095
2046006
-
Ser
CGA
[Ensembl]
¡û
>C10100961
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2048738
2048649
-
Ser
CGA
[Ensembl]
¡û
>C10101075
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2046113
2046024
-
Ser
CGA
[Ensembl]
¡û
>C161001917
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2099834
2099745
-
Ser
CGA
-
¡û
>W1610895790
LRUB01000013
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
80022
80111
+
Ser
CGA
[ENA]
¡û
>W1611020406
LYUD01000045
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17036
16947
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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