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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344043 (18 seq.)
>W131231214
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
86439
86364
-
Val
TAC
[ENA]
¡û
>W131231217
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
85999
85924
-
Val
TAC
[ENA]
¡û
>w014082
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161870
161947
+
Val
TAC
[ENA]
¡û
>w014080
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161660
161737
+
Val
TAC
[ENA]
¡û
>w014077
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161214
161291
+
Val
TAC
[ENA]
¡û
>WENV170682355
LFIK01000016
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
51844
51769
-
Val
TAC
[ENA]
¢þ
>WENV170682357
LFIK01000016
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
51570
51495
-
Val
TAC
[ENA]
¢þ
>C181010968
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1072026
1072101
+
Val
TAC
-
¡û
>C181010971
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073068
1073143
+
Val
TAC
-
¡û
>C181010973
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073519
1073594
+
Val
TAC
-
¡û
>C181200152
CP031415
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [CP031415]
1231235
1231310
+
Val
TAC
-
¡û
>C181200155
CP031415
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [CP031415]
1231770
1231845
+
Val
TAC
-
¡û
>W1911708840
QPEP01000009
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
57644
57719
+
Val
TAC
[ENA]
¡û
>W1911708842
QPEP01000009
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
57834
57909
+
Val
TAC
[ENA]
¡û
>W1911708844
QPEP01000009
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
58148
58223
+
Val
TAC
[ENA]
¡û
>W1810477906
QAPE01000012
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [QAPE]
76
1
-
Val
TAC
[ENA]
¡û
>W1810477922
QAPE01000089
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [QAPE]
458
533
+
Val
TAC
[ENA]
¡û
>C151017312
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2594824
2594899
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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