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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344449 (19 seq.)
>WENV181308494
OFIS01038086
[OFIS] sludge metagenome; sludge
162
237
+
Ala
TGC
[ENA]
¢þ
>WENV170953868
MEHZ011667753
[MEHZ] marine metagenome; marine surface water
2190
2115
-
Ala
TGC
[ENA]
¢þ
>C191130667
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
3509400
3509325
-
Ala
TGC
-
¡û
>C191130669
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
3501523
3501448
-
Ala
TGC
-
¡û
>C191130671
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
3493431
3493356
-
Ala
TGC
-
¡û
>C191152067
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
1531850
1531925
+
Ala
TGC
-
¡û
>C191152071
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
2043712
2043787
+
Ala
TGC
-
¡û
>C191152106
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
1192594
1192519
-
Ala
TGC
-
¡û
>W1810273193
PSNV01000052
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
2046
2121
+
Ala
TGC
[ENA]
¡û
>W1810426038
PYVW01000006
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
150846
150771
-
Ala
TGC
[ENA]
¡û
>W1810426040
PYVW01000006
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
141432
141357
-
Ala
TGC
[ENA]
¡û
>W1810426327
PYWB01000023
Alphaproteobacteria
Devosia submarina JCM 18935 [PYWB]
2113
2188
+
Ala
TGC
[ENA]
¡û
>W1511568549
LAJE01000037
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
2420
2495
+
Ala
TGC
[ENA]
¡û
>W1511568551
LAJE01000037
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
10384
10459
+
Ala
TGC
[ENA]
¡û
>W1511568637
LAJF01000157
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
2102
2177
+
Ala
TGC
[ENA]
¡û
>W1511573939
LANJ01000007
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
11505
11430
-
Ala
TGC
[ENA]
¡û
>W1511573941
LANJ01000007
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
3541
3466
-
Ala
TGC
[ENA]
¡û
>W1511576789
LAPV01000071
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
1997
2072
+
Ala
TGC
[ENA]
¡û
>W1710558682
FOMB01000028
Alphaproteobacteria
Devosia psychrophila [FOMB]
34755
34830
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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