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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344563 (12 seq.)
>WENV181721868
OGPV01011576
[OGPV] human gut metagenome; faeces
1542
1469
-
Lys
TTT
[ENA]
¡û
>WENV181730192
OGQC01000212
[OGQC] human gut metagenome; faeces
33652
33579
-
Lys
TTT
[ENA]
¡û
>WENV182048481
OHEB01000186
[OHEB] human gut metagenome; feces
1652
1725
+
Lys
TTT
[ENA]
¡û
>WENV182070005
OHFI01000144
[OHFI] human gut metagenome; feces
1673
1746
+
Lys
TTT
[ENA]
¡û
>WENV182140826
OHKS01000162
[OHKS] human gut metagenome; feces
1645
1718
+
Lys
TTT
[ENA]
¡û
>WENV182217802
OHQP01003826
[OHQP] human gut metagenome; feces
1614
1687
+
Lys
TTT
[ENA]
¡û
>WENV182607331
OJJU01006812
[OJJU] metagenome; faeces
2128
2055
-
Lys
TTT
[ENA]
¡û
>WENV183381213
OLYJ01001032
[OLYJ] human gut metagenome; feces
6843
6770
-
Lys
TTT
[ENA]
¡û
>WENV183444340
OMCO01002423
[OMCO] human gut metagenome; feces
2961
2888
-
Lys
TTT
[ENA]
¡û
>WENV183445005
OMCP01000598
[OMCP] human gut metagenome; feces
10504
10431
-
Lys
TTT
[ENA]
¡û
>WENV183470736
OMEK01003214
[OMEK] human gut metagenome; feces
1532
1605
+
Lys
TTT
[ENA]
¡û
>WENV183789604
PPYF01386022
[PPYF] human gut metagenome; stool from patient with Crohn's disease
8015
8088
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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