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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344836 (5 seq.)
>WENV181835805
OGVI01021994
[OGVI] freshwater metagenome; freshwater
160
85
-
Glu
TTC
[ENA]
¡û
>WENV181838438
OGVN01000349
[OGVN] freshwater metagenome; freshwater
4104
4179
+
Glu
TTC
[ENA]
¡û
>WENV181851004
OGWE01005123
[OGWE] freshwater metagenome; freshwater
1060
1135
+
Glu
TTC
[ENA]
¡û
>WENV181856466
OGWN01001307
[OGWN] freshwater metagenome; freshwater
1924
1999
+
Glu
TTC
[ENA]
¡û
>WENV181856680
OGWN01008720
[OGWN] freshwater metagenome; freshwater
931
1006
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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