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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345170 (65 seq.)
>W131221370
AUAK01000009
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
76145
76217
+
Gln
TTG
[ENA]
¡û
>W131222654
AUBL01000015
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
15238
15310
+
Gln
TTG
[ENA]
¡û
>WENV180137348
OATO01010118
[OATO] human gut metagenome; faeces
459
531
+
Gln
TTG
[ENA]
¢þ
>WENV180142235
OATV01010998
[OATV] human gut metagenome; faeces
490
418
-
Gln
TTG
[ENA]
¢þ
>WENV180190659
OAXA01000124
[OAXA] human gut metagenome; faeces
12956
12884
-
Gln
TTG
[ENA]
¢þ
>WENV180421016
OBVP01002524
[OBVP] human gut metagenome; faeces
812
884
+
Gln
TTG
[ENA]
¢þ
>WENV180428062
OBWB01004224
[OBWB] human gut metagenome; faeces
249
177
-
Gln
TTG
[ENA]
¢þ
>WENV180734586
ODGZ01013629
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2119
2192
+
Gln
TTG
[ENA]
¢þ
>WENV180759679
ODHY01075611
[ODHY] human metagenome; G_DNA_Buccal mucosa
93
165
+
Gln
TTG
[ENA]
¢þ
>WENV180764575
ODIB01000055
[ODIB] human metagenome; G_DNA_Supragingival plaque
65697
65624
-
Gln
TTG
[ENA]
¢þ
>WENV180778461
ODIM01007915
[ODIM] human metagenome; G_DNA_Supragingival plaque
1174
1247
+
Gln
TTG
[ENA]
¢þ
>WENV180786913
ODIS01000449
[ODIS] human metagenome; G_DNA_Supragingival plaque
17055
16983
-
Gln
TTG
[ENA]
¢þ
>WENV180796718
ODJB01010846
[ODJB] human metagenome; G_DNA_Supragingival plaque
1220
1147
-
Gln
TTG
[ENA]
¢þ
>WENV180796791
ODJB01014020
[ODJB] human metagenome; G_DNA_Supragingival plaque
1649
1577
-
Gln
TTG
[ENA]
¢þ
>WENV180796936
ODJB01020758
[ODJB] human metagenome; G_DNA_Supragingival plaque
612
684
+
Gln
TTG
[ENA]
¢þ
>WENV180800983
ODJD01004198
[ODJD] human metagenome; G_DNA_Supragingival plaque
2664
2591
-
Gln
TTG
[ENA]
¢þ
>WENV180822293
ODJT01000229
[ODJT] human metagenome; G_DNA_Supragingival plaque
13676
13603
-
Gln
TTG
[ENA]
¢þ
>WENV180881515
ODMA01001899
[ODMA] human metagenome; G_DNA_Supragingival plaque
2088
2161
+
Gln
TTG
[ENA]
¢þ
>WENV180888769
ODMN01003420
[ODMN] human metagenome; G_DNA_Supragingival plaque
3499
3426
-
Gln
TTG
[ENA]
¢þ
>WENV180934076
ODTR01019674
[ODTR] human metagenome; G_DNA_Supragingival plaque
59
132
+
Gln
TTG
[ENA]
¢þ
>WENV180934223
ODTR01056758
[ODTR] human metagenome; G_DNA_Supragingival plaque
268
340
+
Gln
TTG
[ENA]
¢þ
>WENV180934830
ODTS01004160
[ODTS] human metagenome; G_DNA_Subgingival plaque
2806
2877
+
Gln
TTG
[ENA]
¢þ
>WENV180938570
ODTX01003496
[ODTX] human metagenome; G_DNA_Supragingival plaque
1308
1380
+
Gln
TTG
[ENA]
¢þ
>WENV180944802
ODUC01036993
[ODUC] human metagenome; G_DNA_Supragingival plaque
1188
1260
+
Gln
TTG
[ENA]
¢þ
>WENV180973429
ODUW01005254
[ODUW] human metagenome; G_DNA_Supragingival plaque
71
-1
-
Gln
TTG
[ENA]
¢þ
>WENV180973436
ODUW01005694
[ODUW] human metagenome; G_DNA_Supragingival plaque
2117
2190
+
Gln
TTG
[ENA]
¢þ
>WENV180980933
ODVE01003935
[ODVE] human metagenome; G_DNA_Supragingival plaque
2116
2189
+
Gln
TTG
[ENA]
¢þ
>WENV180981320
ODVE01015281
[ODVE] human metagenome; G_DNA_Supragingival plaque
778
850
+
Gln
TTG
[ENA]
¢þ
>WENV180983146
ODVF01004182
[ODVF] human metagenome; G_DNA_Supragingival plaque
1574
1646
+
Gln
TTG
[ENA]
¢þ
>WENV180987040
ODVK01003669
[ODVK] human metagenome; G_DNA_Supragingival plaque
2115
2188
+
Gln
TTG
[ENA]
¢þ
>WENV180998973
ODVT01004159
[ODVT] human metagenome; G_DNA_Buccal mucosa
1245
1317
+
Gln
TTG
[ENA]
¢þ
>WENV180999055
ODVT01005163
[ODVT] human metagenome; G_DNA_Buccal mucosa
2112
2185
+
Gln
TTG
[ENA]
¢þ
>WENV181050228
ODYD01009370
[ODYD] human metagenome; G_DNA_Supragingival plaque
1008
935
-
Gln
TTG
[ENA]
¢þ
>WENV181067114
ODZI01006898
[ODZI] human metagenome; G_DNA_Supragingival plaque
2677
2604
-
Gln
TTG
[ENA]
¢þ
>WENV181077399
OEAP01050627
[OEAP] human metagenome; G_DNA_Supragingival plaque
868
939
+
Gln
TTG
[ENA]
¢þ
>WENV181143597
OEHM01002661
[OEHM] human metagenome; G_DNA_Supragingival plaque
2114
2187
+
Gln
TTG
[ENA]
¢þ
>WENV181147158
OEHQ01177643
[OEHQ] human metagenome; G_DNA_Supragingival plaque
71
-1
-
Gln
TTG
[ENA]
¢þ
>WENV181187259
OENY01000694
[OENY] human gut metagenome; human gut
1175
1247
+
Gln
TTG
[ENA]
¢þ
>W141206185
AZLV01000422
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
776
850
+
Gln
TTG
[ENA]
¡û
>WENV182815055
OJYO01000603
[OJYO] human gut metagenome; human gut
5751
5679
-
Gln
TTG
[ENA]
¢þ
>WENV182815329
OJYQ01001527
[OJYQ] human gut metagenome; human gut
838
910
+
Gln
TTG
[ENA]
¢þ
>WENV182822937
OKBP01000274
[OKBP] human gut metagenome; human gut
887
959
+
Gln
TTG
[ENA]
¢þ
>WENV182823002
OKBQ01000544
[OKBQ] human gut metagenome; human gut
330
258
-
Gln
TTG
[ENA]
¢þ
>WENV182845999
OKJI01000214
[OKJI] human gut metagenome; human gut
3093
3165
+
Gln
TTG
[ENA]
¢þ
>WENV182846403
OKJM01000116
[OKJM] human gut metagenome; human gut
4318
4246
-
Gln
TTG
[ENA]
¢þ
>WENV182854985
OKMX01000573
[OKMX] human gut metagenome; human gut
887
959
+
Gln
TTG
[ENA]
¢þ
>WENV182857496
OKNX01003103
[OKNX] human gut metagenome; human gut
40
112
+
Gln
TTG
[ENA]
¢þ
>WENV182961087
OKWK01000156
[OKWK] human gut metagenome; stool
55055
54983
-
Gln
TTG
[ENA]
¢þ
>WENV183510589
OMHP01001272
[OMHP] human oral metagenome; human oral
881
953
+
Gln
TTG
[ENA]
¢þ
>WENV183510875
OMHS01007202
[OMHS] human oral metagenome; human oral
313
385
+
Gln
TTG
[ENA]
¢þ
>WENV183718895
PDWJ01007467
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2656
2582
-
Gln
TTG
[ENA]
¢þ
>C181148273
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
2129980
2129908
-
Gln
TTG
-
¡û
>C191173749
CP040005
Actinomycetota
Actinomyces sp. oral taxon 171 str. F0337 [CP040005]
2715496
2715424
-
Gln
TTG
-
¡û
>C191208264
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
2556353
2556425
+
Gln
TTG
-
¡û
>C191208605
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
23945
24017
+
Gln
TTG
-
¡û
>C191208974
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
177612
177540
-
Gln
TTG
-
¡û
>W09121443
ACFH01000179
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
3119
3193
+
Gln
TTG
[ENA]
¡û
>W141779307
JONS01000033
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
9818
9744
-
Gln
TTG
[ENA]
¡û
>W1810186630
PKHA01000012
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
15316
15388
+
Gln
TTG
[ENA]
¡û
>C151095934
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
2785151
2785079
-
Gln
TTG
-
¡û
>W1511350895
JRMT01000038
Actinomycetota
Actinomyces urogenitalis S6-C4 [JRMT]
55119
55045
-
Gln
TTG
[ENA]
¡û
>W1511444699
JUUL01000088
Actinomycetota
Actinomyces urogenitalis 752_PACI [JUUL]
15041
15115
+
Gln
TTG
[ENA]
¡û
>W1511476003
JWEC01000116
Actinomycetota
Xylanimonas cellulosilytica 107_XCEL [JWEC]
15031
15105
+
Gln
TTG
[ENA]
¡û
>W11133240
AECW01000347
Actinomycetota
Actinomyces sp. oral taxon 171 oral taxon 171 str. F0337 [AECW]
1289
1361
+
Gln
TTG
[ENA]
¡û
>W11171095
AFQC01000058
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
36791
36717
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK