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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345329 (64 seq.)
>C171019437
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
74014
74088
+
Glu
TTC
-
¡û
>C171019473
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
4237657
4237583
-
Glu
TTC
-
¡û
>C171019477
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
4237318
4237244
-
Glu
TTC
-
¡û
>C171019516
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
74014
74088
+
Glu
TTC
-
¡û
>C171019552
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
4236668
4236594
-
Glu
TTC
-
¡û
>C171019556
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
4236329
4236255
-
Glu
TTC
-
¡û
>W131082803
ANZB01000006
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
124632
124706
+
Glu
TTC
[ENA]
¡û
>W131082807
ANZB01000006
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
124971
125045
+
Glu
TTC
[ENA]
¡û
>WENV180323728
OBKR01063081
[OBKR] human gut metagenome; feces
193
267
+
Glu
TTC
[ENA]
¢þ
>WENV180325790
OBKS01010541
[OBKS] human gut metagenome; human gut
2070
2144
+
Glu
TTC
[ENA]
¢þ
>WENV180628430
OCQO01131827
[OCQO] human gut metagenome; human gut
87
13
-
Glu
TTC
[ENA]
¢þ
>WENV180633853
OCRA01077684
[OCRA] human gut metagenome; human gut
312
386
+
Glu
TTC
[ENA]
¢þ
>WENV180701642
ODEE01000301
[ODEE] human metagenome; G_DNA_Stool
16723
16797
+
Glu
TTC
[ENA]
¢þ
>WENV180704291
ODEI01036259
[ODEI] human metagenome; G_DNA_Stool
502
428
-
Glu
TTC
[ENA]
¢þ
>WENV180729897
ODGV01000655
[ODGV] human metagenome; G_DNA_Stool
18076
18150
+
Glu
TTC
[ENA]
¢þ
>WENV180756573
ODHV01031146
[ODHV] human metagenome; G_DNA_Stool
231
157
-
Glu
TTC
[ENA]
¢þ
>WENV180772585
ODIH01132964
[ODIH] human metagenome; G_DNA_Stool
86
160
+
Glu
TTC
[ENA]
¢þ
>WENV180799737
ODJC01020269
[ODJC] human metagenome; G_DNA_Stool
121
47
-
Glu
TTC
[ENA]
¢þ
>WENV180818985
ODJQ01168309
[ODJQ] human metagenome; G_DNA_Stool
27
101
+
Glu
TTC
[ENA]
¢þ
>WENV180828306
ODKA01005664
[ODKA] human metagenome; G_DNA_Stool
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV180838724
ODKG01211994
[ODKG] human metagenome; G_DNA_Stool
37
111
+
Glu
TTC
[ENA]
¢þ
>WENV180848939
ODKV01000014
[ODKV] human metagenome; G_DNA_Stool
37756
37830
+
Glu
TTC
[ENA]
¢þ
>WENV180871573
ODLN01112621
[ODLN] human metagenome; G_DNA_Stool
247
321
+
Glu
TTC
[ENA]
¢þ
>WENV180936055
ODTU01001711
[ODTU] human metagenome; G_DNA_Stool
15171
15097
-
Glu
TTC
[ENA]
¢þ
>WENV180963666
ODUN01329409
[ODUN] human metagenome; G_DNA_Stool
36
110
+
Glu
TTC
[ENA]
¢þ
>WENV180971857
ODUU01116441
[ODUU] human metagenome; G_DNA_Stool
335
261
-
Glu
TTC
[ENA]
¢þ
>WENV180993934
ODVQ01016252
[ODVQ] human metagenome; G_DNA_Stool
1574
1648
+
Glu
TTC
[ENA]
¢þ
>WENV180997361
ODVS01013950
[ODVS] human metagenome; G_DNA_Stool
119
45
-
Glu
TTC
[ENA]
¢þ
>WENV181048647
ODYC01007731
[ODYC] human metagenome; G_DNA_Stool
299
225
-
Glu
TTC
[ENA]
¢þ
>WENV181061162
ODYN01001286
[ODYN] human metagenome; G_DNA_Stool
6207
6281
+
Glu
TTC
[ENA]
¢þ
>WENV181111432
OEEK01078170
[OEEK] human metagenome; G_DNA_Stool
225
151
-
Glu
TTC
[ENA]
¢þ
>WENV181118719
OEFH01027548
[OEFH] human metagenome; G_DNA_Stool
1065
991
-
Glu
TTC
[ENA]
¢þ
>WENV181491782
OGFY01000775
[OGFY] metagenome; Human gut stool
28161
28087
-
Glu
TTC
[ENA]
¢þ
>WENV181700485
OGPG01019276
[OGPG] human gut metagenome; faeces
113
187
+
Glu
TTC
[ENA]
¢þ
>WENV181705911
OGPK01058949
[OGPK] human gut metagenome; faeces
547
621
+
Glu
TTC
[ENA]
¢þ
>WENV181720774
OGPU01063680
[OGPU] human gut metagenome; faeces
114
188
+
Glu
TTC
[ENA]
¢þ
>WENV181762962
OGQX01001481
[OGQX] human gut metagenome; faeces
4176
4250
+
Glu
TTC
[ENA]
¢þ
>WENV181830703
OGUO01009230
[OGUO] human gut metagenome; faeces
2415
2489
+
Glu
TTC
[ENA]
¢þ
>WENV182523859
OIWS01066302
[OIWS] human gut metagenome; faeces
102
28
-
Glu
TTC
[ENA]
¢þ
>WENV182639950
OJLA01157891
[OJLA] metagenome; faeces
247
173
-
Glu
TTC
[ENA]
¢þ
>WENV182649588
OJMG01011625
[OJMG] human gut metagenome; feces
3718
3792
+
Glu
TTC
[ENA]
¢þ
>WENV182652191
OJMH01009754
[OJMH] human gut metagenome; feces
2755
2829
+
Glu
TTC
[ENA]
¢þ
>WENV182655729
OJMI01075871
[OJMI] human gut metagenome; feces
607
533
-
Glu
TTC
[ENA]
¢þ
>WENV182675629
OJNQ01012469
[OJNQ] human gut metagenome; feces
3089
3015
-
Glu
TTC
[ENA]
¢þ
>WENV182885790
OKSC01025771
[OKSC] human gut metagenome; faeces
109
183
+
Glu
TTC
[ENA]
¢þ
>WENV182960293
OKWJ01003707
[OKWJ] human gut metagenome; human gut
1490
1564
+
Glu
TTC
[ENA]
¢þ
>WENV183065673
OLIJ01004691
[OLIJ] metagenome; faeces
478
404
-
Glu
TTC
[ENA]
¢þ
>WENV183507345
OMGY01016765
[OMGY] human gut metagenome; human gut
2780
2854
+
Glu
TTC
[ENA]
¢þ
>WENV170051305
CDZB01063431
[CDZB] gut metagenome; human stools
41975
42049
+
Glu
TTC
[ENA]
¢þ
>W141803751
JPGY01000001
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
14188
14262
+
Glu
TTC
[ENA]
¡û
>W141803801
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
175554
175628
+
Glu
TTC
[ENA]
¡û
>W141803805
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
175893
175967
+
Glu
TTC
[ENA]
¡û
>W1810367448
PVXO01000007
Bacillota
Clostridium liquoris DSM 100320 [PVXO]
2773
2699
-
Glu
TTC
[ENA]
¡û
>W1810367451
PVXO01000007
Bacillota
Clostridium liquoris DSM 100320 [PVXO]
2437
2363
-
Glu
TTC
[ENA]
¡û
>C151047013
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
74014
74088
+
Glu
TTC
[Ensembl]
¡û
>C151047049
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
4236698
4236624
-
Glu
TTC
[Ensembl]
¡û
>C151047053
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
4236359
4236285
-
Glu
TTC
[Ensembl]
¡û
>C151047092
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
74014
74088
+
Glu
TTC
[Ensembl]
¡û
>C151047128
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
4236906
4236832
-
Glu
TTC
[Ensembl]
¡û
>C151047132
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
4236567
4236493
-
Glu
TTC
[Ensembl]
¡û
>W121124034
BAEV01000139
Bacillota
Clostridium arbusti SL206 [BAEV]
760
686
-
Glu
TTC
[ENA]
¡û
>W121124041
BAEV01000156
Bacillota
Clostridium arbusti SL206 [BAEV]
30
104
+
Glu
TTC
[ENA]
¡û
>W1710731252
LFYL01000002
Bacillota
Clostridium pasteurianum [LFYL]
1673893
1673819
-
Glu
TTC
[ENA]
¡û
>W1710731287
LFYL01000009
Bacillota
Clostridium pasteurianum [LFYL]
3383
3457
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK