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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34537 (60 seq.)
>W1710826463
LLEB01000044
Gammaproteobacteria
Acinetobacter pittii [LLEB]
16846
16935
+
Ser
GGA
[ENA]
¡û
>W1710827509
LLFD01000019
Gammaproteobacteria
Acinetobacter nosocomialis baumannii [LLFD]
81916
82005
+
Ser
GGA
[ENA]
¡û
>W1710832973
LLIF01000243
Gammaproteobacteria
Acinetobacter pittii [LLIF]
4810
4899
+
Ser
GGA
[ENA]
¡û
>W1711126646
LUOV01000034
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
1561
1650
+
Ser
GGA
[ENA]
¡û
>W1711358386
MDHZ01000220
Gammaproteobacteria
Acinetobacter pittii [MDHZ]
47482
47571
+
Ser
GGA
[ENA]
¡û
>W1712060152
NGEH01000110
Gammaproteobacteria
Acinetobacter pittii [NGEH]
99
10
-
Ser
GGA
[ENA]
¡û
>W1712062668
NGGH01000020
Gammaproteobacteria
Acinetobacter pittii [NGGH]
60806
60895
+
Ser
GGA
[ENA]
¡û
>W131041892
AMJA01000059
Gammaproteobacteria
Acinetobacter haemolyticus TG19599 [AMJA]
15464
15553
+
Ser
GGA
[ENA]
¡û
>W131041999
AMJC01000093
Gammaproteobacteria
Acinetobacter haemolyticus TG21157 [AMJC]
67232
67321
+
Ser
GGA
[ENA]
¡û
>W131116794
APQM01000011
Gammaproteobacteria
Acinetobacter pittii ANC 4050 [APQM]
229828
229739
-
Ser
GGA
[ENA]
¡û
>W131118638
APRN01000033
Gammaproteobacteria
Acinetobacter higginsii CIP 70.18 [APRN]
245024
245113
+
Ser
GGA
[ENA]
¡û
>W131118705
APRO01000007
Gammaproteobacteria
Acinetobacter dispersus NIPH 1867 [APRO]
239308
239397
+
Ser
GGA
[ENA]
¡û
>W131119855
APSE01000029
Gammaproteobacteria
Acinetobacter sp. CIP 102143 [APSE]
43698
43787
+
Ser
GGA
[ENA]
¡û
>W131169071
AREL01000007
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
55602
55691
+
Ser
GGA
[ENA]
¡û
>W131207071
ATGK01000004
Gammaproteobacteria
Acinetobacter colistiniresistens NIPH 2036 [ATGK]
28324
28235
-
Ser
GGA
[ENA]
¡û
>W141177247
AYER01000011
Gammaproteobacteria
Acinetobacter nectaris CIP 110549 [AYER]
24918
25007
+
Ser
GGA
[ENA]
¡û
>WENV182829636
OKDR01000069
[OKDR] human gut metagenome; human gut
24652
24563
-
Ser
GGA
[ENA]
¢þ
>W141441198
JEWI01000016
Gammaproteobacteria
Acinetobacter sp. 1396970 1396970 [JEWI]
46802
46891
+
Ser
GGA
[ENA]
¡û
>W141446532
JEYJ01000069
Gammaproteobacteria
Acinetobacter sp. 259052 259052 [JEYJ]
3659
3570
-
Ser
GGA
[ENA]
¡û
>WENV170735243
LULL01000338
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
14639
14728
+
Ser
GGA
[ENA]
¢þ
>WENV170963361
MRWG01000132
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
146
57
-
Ser
GGA
[ENA]
¢þ
>W141479804
JFWP02000004
Gammaproteobacteria
Acinetobacter sp. 1000160 1000160 [JFWP]
224089
224000
-
Ser
GGA
[ENA]
¡û
>W141482695
JFXV01000025
Gammaproteobacteria
Acinetobacter sp. 225588 225588 [JFXV]
30708
30619
-
Ser
GGA
[ENA]
¡û
>C191087170
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
2135773
2135684
-
Ser
GGA
-
¡û
>C191107290
CP033535
Gammaproteobacteria
Acinetobacter pittii 2012N21-164 [CP033535]
252498
252409
-
Ser
GGA
-
¡û
>C191107571
CP033557
Gammaproteobacteria
Acinetobacter nosocomialis 2012C01-137 [CP033557]
294172
294083
-
Ser
GGA
-
¡û
>C191156991
CP038009
Gammaproteobacteria
Acinetobacter haemolyticus TJR01 [CP038009]
238146
238057
-
Ser
GGA
-
¡û
>W141706765
JMNZ01000027
Gammaproteobacteria
Acinetobacter sp. 72431 72431 [JMNZ]
42642
42731
+
Ser
GGA
[ENA]
¡û
>W141708158
JMOM01000044
Gammaproteobacteria
Acinetobacter baumannii 1571545 [JMOM]
18469
18558
+
Ser
GGA
[ENA]
¡û
>W141710082
JMPF01000077
Gammaproteobacteria
Acinetobacter baumannii 25977_9 [JMPF]
11436
11525
+
Ser
GGA
[ENA]
¡û
>W1910753421
MKHH01000107
Gammaproteobacteria
Acinetobacter nosocomialis YMC2003/1/R306 [MKHH]
4998
5087
+
Ser
GGA
[ENA]
¡û
>W1910753833
MKHO01000069
Gammaproteobacteria
Acinetobacter pittii YMC2013/3/R2081 [MKHO]
4467
4378
-
Ser
GGA
[ENA]
¡û
>W1910896871
NGAB01000012
Gammaproteobacteria
Acinetobacter pittii CEB-Ap [NGAB]
10326
10415
+
Ser
GGA
[ENA]
¡û
>W1911190957
NQXE01000004
Gammaproteobacteria
Acinetobacter pittii HDV312665 [NQXE]
6324
6235
-
Ser
GGA
[ENA]
¡û
>W1911191505
NQXN01000005
Gammaproteobacteria
Acinetobacter pittii MCR16048 [NQXN]
5426
5337
-
Ser
GGA
[ENA]
¡û
>W1911413175
NWVY01000009
Gammaproteobacteria
Acinetobacter pittii IHIT32685 [NWVY]
6640
6551
-
Ser
GGA
[ENA]
¡û
>W1911413243
NWVZ01000004
Gammaproteobacteria
Acinetobacter pittii IHIT32473 [NWVZ]
6640
6551
-
Ser
GGA
[ENA]
¡û
>W1810016499
BGNT01000106
Gammaproteobacteria
Acinetobacter colistiniresistens 13BJ NR1165 [BGNT]
31065
31154
+
Ser
GGA
[ENA]
¡û
>W1810225626
POVU01000007
Gammaproteobacteria
Acinetobacter sp. MB5 [POVU]
26175
26086
-
Ser
GGA
[ENA]
¡û
>W1810383359
PXME01000040
Gammaproteobacteria
Acinetobacter nosocomialis AB32 [PXME]
6556
6467
-
Ser
GGA
[ENA]
¡û
>W1810384329
PXMW01000011
Gammaproteobacteria
Acinetobacter nosocomialis AB14 [PXMW]
57855
57766
-
Ser
GGA
[ENA]
¡û
>W1810384532
PXMZ01000014
Gammaproteobacteria
Acinetobacter nosocomialis AB11 [PXMZ]
128771
128860
+
Ser
GGA
[ENA]
¡û
>W1810487329
QAYM01000018
Gammaproteobacteria
Acinetobacter pittii KCJK7889 [QAYM]
240901
240812
-
Ser
GGA
[ENA]
¡û
>W1810593303
QFYC01000001
Gammaproteobacteria
Acinetobacter nosocomialis 2010N17-248 [QFYC]
308744
308655
-
Ser
GGA
[ENA]
¡û
>W1810593449
QFYE01000005
Gammaproteobacteria
Acinetobacter nosocomialis 2014S01-097 [QFYE]
304562
304473
-
Ser
GGA
[ENA]
¡û
>C151067463
CP010368
Gammaproteobacteria
Acinetobacter nosocomialis 6411 [CP010368]
273291
273202
-
Ser
GGA
[Ensembl]
¡û
>W10103343
ACQF01000034
Gammaproteobacteria
Acinetobacter sp. RUH 2624 RUH2624 [ACQF]
3355
3266
-
Ser
GGA
[ENA]
¡û
>W1510016353
BBSE01000014
Gammaproteobacteria
Acinetobacter haemolyticus NBRC 109758 [BBSE]
46041
46130
+
Ser
GGA
[ENA]
¡û
>W1510018168
BBTW01000053
Gammaproteobacteria
Acinetobacter nosocomialis NBRC 110502 [BBTW]
6813
6902
+
Ser
GGA
[ENA]
¡û
>W10110766
ADCH01000052
Gammaproteobacteria
Acinetobacter sp. SH024 [ADCH]
6784
6695
-
Ser
GGA
[ENA]
¡û
>W11103499
ACQF01000034
Gammaproteobacteria
Acinetobacter sp. RUH 2624 RUH2624 [ACQF]
3355
3266
-
Ser
GGA
[ENA]
¡û
>W11113203
ADCH01000052
Gammaproteobacteria
Acinetobacter sp. SH024 [ADCH]
6784
6695
-
Ser
GGA
[ENA]
¡û
>W1511352238
JROB01000001
Gammaproteobacteria
Acinetobacter sp. MN12 [JROB]
93040
93129
+
Ser
GGA
[ENA]
¡û
>W1511391700
JSZD01000012
Gammaproteobacteria
Acinetobacter sp. neg1 [JSZD]
220889
220800
-
Ser
GGA
[ENA]
¡û
>W121047458
AIEJ01000002
Gammaproteobacteria
Acinetobacter nosocomialis 13TU str. NCTC 8102 [AIEJ]
120882
120793
-
Ser
GGA
[ENA]
¡û
>W1610689739
LLEB01000044
Gammaproteobacteria
Acinetobacter pittii [LLEB]
16846
16935
+
Ser
GGA
[ENA]
¡û
>W1610690786
LLFD01000019
Gammaproteobacteria
Acinetobacter nosocomialis baumannii [LLFD]
81916
82005
+
Ser
GGA
[ENA]
¡û
>W1610696250
LLIF01000243
Gammaproteobacteria
Acinetobacter pittii [LLIF]
4810
4899
+
Ser
GGA
[ENA]
¡û
>W1610937579
LUOV01000034
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
1561
1650
+
Ser
GGA
[ENA]
¡û
>W1710013212
APCE01000026
Gammaproteobacteria
Acinetobacter nosocomialis P020 [APCE]
18100
18189
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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