This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345524 (24 seq.)
>C171030645
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1446544
1446469
-
Ala
TGC
-
¡û
>WENV180141617
OATU01034039
[OATU] human gut metagenome; faeces
63
136
+
Ala
TGC
[ENA]
¢þ
>WENV180324266
OBKR01229340
[OBKR] human gut metagenome; feces
116
191
+
Ala
TGC
[ENA]
¢þ
>WENV180447148
OBXC01017731
[OBXC] human gut metagenome; faeces
151
78
-
Ala
TGC
[ENA]
¢þ
>WENV180447275
OBXC01042641
[OBXC] human gut metagenome; faeces
261
188
-
Ala
TGC
[ENA]
¢þ
>WENV180447276
OBXC01042641
[OBXC] human gut metagenome; faeces
151
78
-
Ala
TGC
[ENA]
¢þ
>WENV182409668
OIFJ01000091
[OIFJ] human gut metagenome; stool
79905
79832
-
Ala
TGC
[ENA]
¢þ
>WENV182409674
OIFJ01000091
[OIFJ] human gut metagenome; stool
78786
78713
-
Ala
TGC
[ENA]
¢þ
>WENV182481449
OIRB01004189
[OIRB] human gut metagenome; human gut
1618
1545
-
Ala
TGC
[ENA]
¢þ
>WENV182487773
OIRX01002531
[OIRX] human gut metagenome; human gut
528
601
+
Ala
TGC
[ENA]
¢þ
>WENV182491488
OISK01003608
[OISK] human gut metagenome; human gut
1331
1258
-
Ala
TGC
[ENA]
¢þ
>WENV182961539
OKWL01000044
[OKWL] human gut metagenome; stool
2
75
+
Ala
TGC
[ENA]
¢þ
>WENV183015191
OLEN01003663
[OLEN] human gut metagenome; human gut
1615
1542
-
Ala
TGC
[ENA]
¢þ
>WENV183590036
OOCW01046652
[OOCW] human gut metagenome; human gut
333
260
-
Ala
TGC
[ENA]
¢þ
>C181136088
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
13965
14040
+
Ala
TGC
-
¡û
>C181136099
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
130123
130198
+
Ala
TGC
-
¡û
>C181136154
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2736090
2736015
-
Ala
TGC
-
¡û
>C181136157
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2732662
2732587
-
Ala
TGC
-
¡û
>W141806518
JPMD01000068
Bacillota
Clostridium sulfidigenes [JPMD]
520
595
+
Ala
TGC
[ENA]
¡û
>C151014220
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1645612
1645687
+
Ala
TGC
[Ensembl]
¡û
>W1510725248
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2721941
2721866
-
Ala
TGC
[ENA]
¡û
>W1510725259
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1966681
1966607
-
Ala
TGC
[ENA]
¡û
>W1610104256
CZBO01000025
Bacillota
Clostridium baratii [CZBO]
1662
1737
+
Ala
TGC
[ENA]
¡û
>W1710106960
CZBO01000025
Bacillota
Clostridium baratii [CZBO]
1662
1737
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK