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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346065 (68 seq.)
>W131162585
AQYZ01000034
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
1330
1404
+
Thr
TGT
[ENA]
¡û
>W131162935
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
212447
212520
+
Thr
TGT
[ENA]
¡û
>WENV180102819
OAOZ01023347
[OAOZ] marine metagenome; ENVO:00002010
112
186
+
Thr
TGT
[ENA]
¢þ
>WENV180110574
OAPN01000904
[OAPN] marine metagenome; 2011
1498
1426
-
Thr
TGT
[ENA]
¢þ
>WENV180110793
OAPN01007016
[OAPN] marine metagenome; 2011
340
412
+
Thr
TGT
[ENA]
¢þ
>WENV180113885
OAPR01043422
[OAPR] marine metagenome; seawater
486
412
-
Thr
TGT
[ENA]
¢þ
>WENV180115077
OAPS01116272
[OAPS] marine metagenome; sea water
368
442
+
Thr
TGT
[ENA]
¢þ
>WENV180208805
OBAJ01047483
[OBAJ] marine metagenome; Coastal water
341
269
-
Thr
TGT
[ENA]
¢þ
>WENV180357363
OBNN01004724
[OBNN] marine metagenome; Coastal water
722
650
-
Thr
TGT
[ENA]
¢þ
>WENV180357450
OBNN01011043
[OBNN] marine metagenome; Coastal water
459
387
-
Thr
TGT
[ENA]
¢þ
>WENV180377092
OBON01000343
[OBON] marine metagenome; sea water
1251
1177
-
Thr
TGT
[ENA]
¢þ
>WENV180377120
OBON01000797
[OBON] marine metagenome; sea water
2922
2994
+
Thr
TGT
[ENA]
¢þ
>WENV180377332
OBON01011552
[OBON] marine metagenome; sea water
427
353
-
Thr
TGT
[ENA]
¢þ
>WENV181367692
OFQC01001823
[OFQC] freshwater metagenome; Freshwater Lake
202
274
+
Thr
TGT
[ENA]
¢þ
>WENV181368338
OFQL01000830
[OFQL] freshwater metagenome; Freshwater Lake
1711
1639
-
Thr
TGT
[ENA]
¢þ
>WENV181368826
OFQN01001114
[OFQN] freshwater metagenome; Freshwater Lake
2729
2655
-
Thr
TGT
[ENA]
¢þ
>WENV181369565
OFQP01008154
[OFQP] freshwater metagenome; Freshwater Lake
128
54
-
Thr
TGT
[ENA]
¢þ
>WENV181369585
OFQP01009856
[OFQP] freshwater metagenome; Freshwater Lake
296
224
-
Thr
TGT
[ENA]
¢þ
>WENV181369914
OFQR01002329
[OFQR] freshwater metagenome; Freshwater Lake
586
658
+
Thr
TGT
[ENA]
¢þ
>WENV181370359
OFQS01005533
[OFQS] freshwater metagenome; Freshwater Lake
810
735
-
Thr
TGT
[ENA]
¢þ
>WENV181370690
OFQT01003366
[OFQT] freshwater metagenome; Freshwater Lake
312
384
+
Thr
TGT
[ENA]
¢þ
>WENV181371094
OFQU01023783
[OFQU] wastewater metagenome; Exp Tend CN 90WW
434
362
-
Thr
TGT
[ENA]
¢þ
>WENV181377153
OFRA01003022
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1003
1075
+
Thr
TGT
[ENA]
¢þ
>WENV181377575
OFRA01018682
[OFRA] wastewater metagenome; Lake Maggiore Verbania
111
185
+
Thr
TGT
[ENA]
¢þ
>WENV181377826
OFRA01035672
[OFRA] wastewater metagenome; Lake Maggiore Verbania
424
352
-
Thr
TGT
[ENA]
¢þ
>WENV181379708
OFRD01006541
[OFRD] wastewater metagenome; Exp Tend CN 100WW
994
922
-
Thr
TGT
[ENA]
¢þ
>WENV181385485
OFRI01099527
[OFRI] wastewater metagenome; Exp Tend VB 90WW
361
435
+
Thr
TGT
[ENA]
¢þ
>WENV181386452
OFRL01004256
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
3250
3178
-
Thr
TGT
[ENA]
¢þ
>WENV181395749
OFSB01001479
[OFSB] freshwater metagenome; Freshwater Lake
99
25
-
Thr
TGT
[ENA]
¢þ
>WENV181395769
OFSB01002029
[OFSB] freshwater metagenome; Freshwater Lake
3
75
+
Thr
TGT
[ENA]
¢þ
>WENV181395785
OFSB01003464
[OFSB] freshwater metagenome; Freshwater Lake
231
159
-
Thr
TGT
[ENA]
¢þ
>WENV181399794
OFSE01075829
[OFSE] wastewater metagenome; Exp Tend VB 50WW
121
49
-
Thr
TGT
[ENA]
¢þ
>WENV181399996
OFSF01000629
[OFSF] wastewater metagenome; Exp Tend VB 100WW
8460
8388
-
Thr
TGT
[ENA]
¢þ
>WENV181400531
OFSF01009442
[OFSF] wastewater metagenome; Exp Tend VB 100WW
391
463
+
Thr
TGT
[ENA]
¢þ
>WENV181400997
OFSF01040494
[OFSF] wastewater metagenome; Exp Tend VB 100WW
765
837
+
Thr
TGT
[ENA]
¢þ
>W141170870
AXZA01000003
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
1323
1249
-
Thr
TGT
[ENA]
¡û
>WENV181843514
OGVU01021524
[OGVU] freshwater metagenome; freshwater
736
662
-
Thr
TGT
[ENA]
¢þ
>WENV001814
AACY020051574
Marine microbial communities from Global Ocean Sampling (GOS)
1487
1411
-
Thr
TGT
[ENA]
>WENV170570438
FLOH01000004
[FLOH] marine metagenome; water
619896
619822
-
Thr
TGT
[ENA]
¢þ
>WENV170604050
FUWD010356477
[FUWD] metagenome; unknown
252
326
+
Thr
TGT
[ENA]
¢þ
>WENV170606154
FUWD010624346
[FUWD] metagenome; unknown
302
228
-
Thr
TGT
[ENA]
¢þ
>WENV170606230
FUWD010634243
[FUWD] metagenome; unknown
534
460
-
Thr
TGT
[ENA]
¢þ
>WENV170606468
FUWD010673693
[FUWD] metagenome; unknown
6
78
+
Thr
TGT
[ENA]
¢þ
>WENV170617834
FUWD012938280
[FUWD] metagenome; unknown
94
20
-
Thr
TGT
[ENA]
¢þ
>WENV170619236
FUWD013006135
[FUWD] metagenome; unknown
254
326
+
Thr
TGT
[ENA]
¢þ
>WENV170621586
FUWD013063898
[FUWD] metagenome; unknown
976
902
-
Thr
TGT
[ENA]
¢þ
>WENV170629768
FUWD013279906
[FUWD] metagenome; unknown
976
902
-
Thr
TGT
[ENA]
¢þ
>WENV170645471
JNSJ01000010
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2595
2521
-
Thr
TGT
[ENA]
¢þ
>WENV170645496
JNSK01000016
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
27387
27315
-
Thr
TGT
[ENA]
¢þ
>C181018714
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
142081
142009
-
Thr
TGT
-
¡û
>C181018724
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
502336
502409
+
Thr
TGT
-
¡û
>C181020833
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
123110
123182
+
Thr
TGT
-
¡û
>C181021110
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1224844
1224772
-
Thr
TGT
-
¡û
>C181021241
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
103297
103369
+
Thr
TGT
-
¡û
>C181021321
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
136659
136731
+
Thr
TGT
-
¡û
>C181021354
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
101007
101079
+
Thr
TGT
-
¡û
>WENV028788
AACY021145336
Marine microbial communities from Global Ocean Sampling (GOS)
574
650
+
Thr
TGT
[ENA]
>WENV057398
AACY023293555
Marine microbial communities from Global Ocean Sampling (GOS)
1349
1425
+
Thr
TGT
[ENA]
>WENV057641
AACY023301115
Marine microbial communities from Global Ocean Sampling (GOS)
420
344
-
Thr
TGT
[ENA]
>WENV058003
AACY023314319
Marine microbial communities from Global Ocean Sampling (GOS)
856
930
+
Thr
TGT
[ENA]
>WENV058062
AACY023316062
Marine microbial communities from Global Ocean Sampling (GOS)
381
457
+
Thr
TGT
[ENA]
>WENV058392
AACY023327558
Marine microbial communities from Global Ocean Sampling (GOS)
325
401
+
Thr
TGT
[ENA]
>W1610597594
LFFA01000064
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
12214
12140
-
Thr
TGT
[ENA]
¡û
>W1610625340
LIAM01000001
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
36289
36215
-
Thr
TGT
[ENA]
¡û
>W1610625379
LIAN01000210
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1041
1115
+
Thr
TGT
[ENA]
¡û
>W1710718841
LFFA01000064
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
12214
12140
-
Thr
TGT
[ENA]
¡û
>W1710756467
LIAM01000001
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
36289
36215
-
Thr
TGT
[ENA]
¡û
>W1710756506
LIAN01000210
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1041
1115
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK