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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346486 (22 seq.)
>WENV180620369
OCQB01064508
[OCQB] human gut metagenome; human gut
410
484
+
Met
CAT
[ENA]
¢þ
>WENV180818240
ODJQ01012754
[ODJQ] human metagenome; G_DNA_Stool
1485
1559
+
Met
CAT
[ENA]
¢þ
>WENV181071780
OEAN01000109
[OEAN] human metagenome; G_DNA_Stool
112418
112344
-
Met
CAT
[ENA]
¢þ
>WENV181700905
OGPH01000069
[OGPH] human gut metagenome; faeces
9647
9721
+
Met
CAT
[ENA]
¢þ
>WENV181728194
OGQA01024461
[OGQA] human gut metagenome; faeces
1633
1707
+
Met
CAT
[ENA]
¢þ
>WENV181788640
OGRO01002332
[OGRO] human gut metagenome; faeces
7282
7356
+
Met
CAT
[ENA]
¢þ
>WENV181799900
OGRY01007306
[OGRY] human gut metagenome; faeces
1899
1973
+
Met
CAT
[ENA]
¢þ
>WENV182437915
OIJK01006893
[OIJK] human gut metagenome; human gut
832
758
-
Met
CAT
[ENA]
¢þ
>WENV182440815
OIKA01014935
[OIKA] human gut metagenome; human gut
707
633
-
Met
CAT
[ENA]
¢þ
>WENV182447194
OILE01004492
[OILE] human gut metagenome; human gut
815
741
-
Met
CAT
[ENA]
¢þ
>WENV182451100
OILY01019438
[OILY] human gut metagenome; human gut
496
422
-
Met
CAT
[ENA]
¢þ
>WENV182451867
OIMB01004495
[OIMB] human gut metagenome; human gut
1615
1689
+
Met
CAT
[ENA]
¢þ
>WENV182459256
OINK01006430
[OINK] human gut metagenome; human gut
111
185
+
Met
CAT
[ENA]
¢þ
>WENV182459644
OINM01003250
[OINM] human gut metagenome; human gut
1412
1486
+
Met
CAT
[ENA]
¢þ
>WENV182469703
OIPE01001875
[OIPE] human gut metagenome; human gut
3144
3070
-
Met
CAT
[ENA]
¢þ
>WENV182471151
OIPI01010763
[OIPI] human gut metagenome; human gut
314
388
+
Met
CAT
[ENA]
¢þ
>WENV182472157
OIPN01010766
[OIPN] human gut metagenome; human gut
1172
1098
-
Met
CAT
[ENA]
¢þ
>WENV182474464
OIPV01024293
[OIPV] human gut metagenome; human gut
512
438
-
Met
CAT
[ENA]
¢þ
>WENV183004250
OLCU01018537
[OLCU] human gut metagenome; human gut
600
526
-
Met
CAT
[ENA]
¢þ
>WENV183751631
PPYE01023743
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
996
1070
+
Met
CAT
[ENA]
¢þ
>WENV183764265
PPYE01319606
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
69752
69826
+
Met
CAT
[ENA]
¢þ
>WENV170057830
CDZG01053121
[CDZG] gut metagenome; human stools
9725
9799
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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