This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346602 (78 seq.)
>W1710802237
LJXT01000078
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
18671
18743
+
Glu
TTC
[ENA]
¡û
>W131218685
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
1252001
1252075
+
Glu
TTC
[ENA]
¡û
>W131218722
ATXY01000011
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
189911
189837
-
Glu
TTC
[ENA]
¡û
>W131218723
ATXY01000011
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
189758
189684
-
Glu
TTC
[ENA]
¡û
>W131211917
ATNM01000107
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
54352
54280
-
Glu
TTC
[ENA]
¡û
>W131211918
ATNM01000107
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
54251
54177
-
Glu
TTC
[ENA]
¡û
>W131223091
AUBU01000003
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
82598
82524
-
Glu
TTC
[ENA]
¡û
>W131223092
AUBU01000003
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
82492
82420
-
Glu
TTC
[ENA]
¡û
>W131223194
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
435784
435858
+
Glu
TTC
[ENA]
¡û
>W131223195
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
435944
436018
+
Glu
TTC
[ENA]
¡û
>W1711707922
MSSW01000030
Bacteroidota
Algoriphagus antarcticus [MSSW]
113688
113616
-
Glu
TTC
[ENA]
¡û
>W1711707923
MSSW01000030
Bacteroidota
Algoriphagus antarcticus [MSSW]
113570
113496
-
Glu
TTC
[ENA]
¡û
>W1711707956
MSSX01000005
Bacteroidota
Algoriphagus faecimaris [MSSX]
97130
97058
-
Glu
TTC
[ENA]
¡û
>W1711707957
MSSX01000005
Bacteroidota
Algoriphagus faecimaris [MSSX]
96990
96918
-
Glu
TTC
[ENA]
¡û
>w023303
AAXU01000001
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
547007
547081
+
Glu
TTC
[ENA]
¡û
>w023302
AAXU01000001
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
546878
546954
+
Glu
TTC
[ENA]
¡û
>W141039124
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
330050
330124
+
Glu
TTC
[ENA]
¡û
>W141043733
AMGM01000096
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
11503
11575
+
Glu
TTC
[ENA]
¡û
>WENV181233904
OFET01000262
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
32425
32497
+
Glu
TTC
[ENA]
¢þ
>WENV181233905
OFET01000262
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
32532
32604
+
Glu
TTC
[ENA]
¢þ
>WENV181384240
OFRH01042610
[OFRH] wastewater metagenome; Exp Tend NO 100WW
342
270
-
Glu
TTC
[ENA]
¢þ
>WENV181385478
OFRI01097560
[OFRI] wastewater metagenome; Exp Tend VB 90WW
398
470
+
Glu
TTC
[ENA]
¢þ
>WENV181838854
OGVN01025878
[OGVN] freshwater metagenome; freshwater
730
658
-
Glu
TTC
[ENA]
¢þ
>WENV181843171
OGVU01001960
[OGVU] freshwater metagenome; freshwater
950
878
-
Glu
TTC
[ENA]
¢þ
>WENV181857588
OGWO01017057
[OGWO] freshwater metagenome; freshwater
425
497
+
Glu
TTC
[ENA]
¢þ
>W141278898
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1130039
1130113
+
Glu
TTC
[ENA]
¡û
>W141278899
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1130146
1130218
+
Glu
TTC
[ENA]
¡û
>WENV170193842
CEPI01047917
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
90
-
Glu
TTC
[ENA]
¢þ
>WENV170408556
CEUI01037346
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
143
217
+
Glu
TTC
[ENA]
¢þ
>WENV170436442
CEUT01054766
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
146
72
-
Glu
TTC
[ENA]
¢þ
>WENV170832023
MDSZ01054845
[MDSZ] marine metagenome; seawater
4
78
+
Glu
TTC
[ENA]
¢þ
>WENV170832024
MDSZ01054845
[MDSZ] marine metagenome; seawater
172
246
+
Glu
TTC
[ENA]
¢þ
>C181177190
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1886253
1886181
-
Glu
TTC
-
¡û
>C181187351
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
5576769
5576843
+
Glu
TTC
-
¡û
>C181187352
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
5576870
5576942
+
Glu
TTC
-
¡û
>C191175199
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4525102
4525028
-
Glu
TTC
-
¡û
>C191175200
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4525001
4524929
-
Glu
TTC
-
¡û
>C191189174
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4421594
4421520
-
Glu
TTC
-
¡û
>C191189175
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4421494
4421422
-
Glu
TTC
-
¡û
>W141699661
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
323928
323854
-
Glu
TTC
[ENA]
¡û
>W141699662
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
323829
323755
-
Glu
TTC
[ENA]
¡û
>W1910932875
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
408352
408280
-
Glu
TTC
[ENA]
¡û
>W1910932876
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
408246
408174
-
Glu
TTC
[ENA]
¡û
>W1910941796
NJFZ01000003
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
268873
268945
+
Glu
TTC
[ENA]
¡û
>W1910941797
NJFZ01000003
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
269008
269080
+
Glu
TTC
[ENA]
¡û
>W1910941843
NJFZ01000035
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
9395
9467
+
Glu
TTC
[ENA]
¡û
>SRA1003918
SRR002328.34026
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
190
264
+
Glu
TTC
[SRA]
>SRA1004044
SRR002328.113003
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
42
116
+
Glu
TTC
[SRA]
>W1810531977
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
139535
139607
+
Glu
TTC
[ENA]
¡û
>W1810531978
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
139638
139710
+
Glu
TTC
[ENA]
¡û
>W1810596503
QGGO01000008
Bacteroidota
Arcicella aurantiaca DSM 22214 [QGGO]
158842
158914
+
Glu
TTC
[ENA]
¡û
>W1810686028
QKZT01000004
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
179326
179398
+
Glu
TTC
[ENA]
¡û
>W1810686029
QKZT01000004
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
179445
179519
+
Glu
TTC
[ENA]
¡û
>W1810686065
QKZU01000007
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
58057
58129
+
Glu
TTC
[ENA]
¡û
>W1810686066
QKZU01000007
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
58180
58254
+
Glu
TTC
[ENA]
¡û
>C151090023
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4832023
4831949
-
Glu
TTC
[Ensembl]
¡û
>C151090024
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4831923
4831849
-
Glu
TTC
[Ensembl]
¡û
>WENV058321
AACY023324731
Marine microbial communities from Global Ocean Sampling (GOS)
1060
1136
+
Glu
TTC
[ENA]
>W121064828
AJMQ01000075
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
7122
7050
-
Glu
TTC
[ENA]
¡û
>W121071532
AJYA01000020
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
3284
3358
+
Glu
TTC
[ENA]
¡û
>C131003306
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4392340
4392266
-
Glu
TTC
[Ensembl]
¡û
>C131003307
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4392240
4392168
-
Glu
TTC
[Ensembl]
¡û
>W1610666094
LJXT01000078
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
18671
18743
+
Glu
TTC
[ENA]
¡û
>W1710513383
FNAC01000006
Bacteroidota
Algoriphagus faecimaris [FNAC]
50451
50523
+
Glu
TTC
[ENA]
¡û
>W1710513384
FNAC01000006
Bacteroidota
Algoriphagus faecimaris [FNAC]
50591
50663
+
Glu
TTC
[ENA]
¡û
>W1710520393
FNFO01000009
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
211068
211142
+
Glu
TTC
[ENA]
¡û
>W1710542606
FNZH01000001
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
1134119
1134191
+
Glu
TTC
[ENA]
¡û
>W1710542607
FNZH01000001
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
1134221
1134295
+
Glu
TTC
[ENA]
¡û
>W1710562652
FOPC01000003
Bacteroidota
Algoriphagus hitonicola [FOPC]
159898
159970
+
Glu
TTC
[ENA]
¡û
>W1710571392
FOVW01000006
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
4064
3990
-
Glu
TTC
[ENA]
¡û
>W1710571393
FOVW01000006
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
3896
3822
-
Glu
TTC
[ENA]
¡û
>W1710573234
FOXH01000002
Bacteroidota
Pseudarcicella hirudinis [FOXH]
656921
656995
+
Glu
TTC
[ENA]
¡û
>W1710573245
FOXH01000009
Bacteroidota
Pseudarcicella hirudinis [FOXH]
147780
147854
+
Glu
TTC
[ENA]
¡û
>W1710593061
FRCY01000003
Bacteroidota
Cyclobacterium lianum [FRCY]
189804
189876
+
Glu
TTC
[ENA]
¡û
>W1710593718
FRXN01000001
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
704101
704027
-
Glu
TTC
[ENA]
¡û
>W1710593719
FRXN01000001
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
703943
703869
-
Glu
TTC
[ENA]
¡û
>W1710594210
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1761101
1761027
-
Glu
TTC
[ENA]
¡û
>W1710594211
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1760975
1760901
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK