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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3467 (122 seq.)
>W1711581275
MNTW01000028
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
5523
5617
+
Ser
CGA
[ENA]
¡û
>C171129819
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
2685171
2685077
-
Ser
CGA
-
¡û
>C008068
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
1902414
1902508
+
Ser
CGA
[Ensembl]
¡û
>C008169
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
1596173
1596079
-
Ser
CGA
[Ensembl]
¡û
>WENV180205285
OBAH01013100
[OBAH] human gut metagenome; human gut
1648
1742
+
Ser
CGA
[ENA]
¢þ
>WENV180243498
OBDJ01026349
[OBDJ] human gut metagenome; human gut
83
177
+
Ser
CGA
[ENA]
¢þ
>WENV180323927
OBKR01100887
[OBKR] human gut metagenome; feces
265
171
-
Ser
CGA
[ENA]
¢þ
>WENV180326335
OBKS01056025
[OBKS] human gut metagenome; human gut
496
590
+
Ser
CGA
[ENA]
¢þ
>WENV180762220
ODHZ01078243
[ODHZ] human metagenome; G_DNA_Stool
592
498
-
Ser
CGA
[ENA]
¢þ
>WENV180851643
ODKV01133681
[ODKV] human metagenome; G_DNA_Stool
84
178
+
Ser
CGA
[ENA]
¢þ
>WENV180905723
ODPF01081579
[ODPF] human metagenome; G_DNA_Stool
357
263
-
Ser
CGA
[ENA]
¢þ
>WENV181024178
ODWX01041488
[ODWX] human metagenome; G_DNA_Stool
7
101
+
Ser
CGA
[ENA]
¢þ
>WENV181239916
OFFD01024978
[OFFD] mouse gut metagenome; faeces
1049
955
-
Ser
CGA
[ENA]
¢þ
>WENV181241998
OFFF01019142
[OFFF] mouse gut metagenome; faeces
1869
1775
-
Ser
CGA
[ENA]
¢þ
>WENV181247386
OFFK01022070
[OFFK] mouse gut metagenome; faeces
252
346
+
Ser
CGA
[ENA]
¢þ
>WENV181248494
OFFL01006250
[OFFL] mouse gut metagenome; faeces
2703
2609
-
Ser
CGA
[ENA]
¢þ
>WENV181254772
OFFR01055672
[OFFR] mouse gut metagenome; faeces
618
524
-
Ser
CGA
[ENA]
¢þ
>WENV181256832
OFFT01042287
[OFFT] mouse gut metagenome; faeces
615
521
-
Ser
CGA
[ENA]
¢þ
>WENV181260157
OFFW01021316
[OFFW] mouse gut metagenome; faeces
1892
1798
-
Ser
CGA
[ENA]
¢þ
>WENV181261470
OFFX01054351
[OFFX] mouse gut metagenome; faeces
680
586
-
Ser
CGA
[ENA]
¢þ
>WENV181263731
OFFZ01011780
[OFFZ] mouse gut metagenome; faeces
2930
2836
-
Ser
CGA
[ENA]
¢þ
>WENV181271087
OFGF01006175
[OFGF] mouse gut metagenome; faeces
1969
1875
-
Ser
CGA
[ENA]
¢þ
>WENV181272513
OFGG01019142
[OFGG] mouse gut metagenome; faeces
140
234
+
Ser
CGA
[ENA]
¢þ
>WENV181273939
OFGH01019370
[OFGH] mouse gut metagenome; faeces
1853
1759
-
Ser
CGA
[ENA]
¢þ
>WENV181280028
OFGN01020206
[OFGN] mouse gut metagenome; faeces
1182
1088
-
Ser
CGA
[ENA]
¢þ
>WENV181287741
OFGX01030108
[OFGX] mouse gut metagenome; faeces
1184
1090
-
Ser
CGA
[ENA]
¢þ
>WENV181301306
OFHN01089991
[OFHN] mouse gut metagenome; faeces
389
295
-
Ser
CGA
[ENA]
¢þ
>WENV181332489
OFMA01002136
[OFMA] human gut metagenome; human gut
5032
5126
+
Ser
CGA
[ENA]
¢þ
>WENV181341349
OFMH01050934
[OFMH] human gut metagenome; human gut
389
295
-
Ser
CGA
[ENA]
¢þ
>WENV181445869
OGDS01022999
[OGDS] metagenome; Human gut stool
316
222
-
Ser
CGA
[ENA]
¢þ
>WENV181460573
OGEL01022999
[OGEL] metagenome; Human gut stool
316
222
-
Ser
CGA
[ENA]
¢þ
>WENV181495035
OGGB01048768
[OGGB] metagenome; Human gut stool
268
174
-
Ser
CGA
[ENA]
¢þ
>WENV181540124
OGIA01004925
[OGIA] metagenome; Human gut stool
754
848
+
Ser
CGA
[ENA]
¢þ
>WENV181578352
OGJY01001049
[OGJY] metagenome; Human gut stool
28754
28660
-
Ser
CGA
[ENA]
¢þ
>WENV181603194
OGLH01024082
[OGLH] metagenome; Human gut stool
527
433
-
Ser
CGA
[ENA]
¢þ
>WENV181609562
OGLN01064313
[OGLN] metagenome; Human gut stool
515
421
-
Ser
CGA
[ENA]
¢þ
>WENV181622275
OGMF01095164
[OGMF] metagenome; Human gut stool
271
365
+
Ser
CGA
[ENA]
¢þ
>WENV181631317
OGMR01007819
[OGMR] metagenome; Human gut stool
1933
2027
+
Ser
CGA
[ENA]
¢þ
>WENV181637499
OGNB01011416
[OGNB] metagenome; Human gut stool
431
337
-
Ser
CGA
[ENA]
¢þ
>WENV181641464
OGNF01004468
[OGNF] metagenome; Human gut stool
2180
2086
-
Ser
CGA
[ENA]
¢þ
>WENV181669374
OGOL01026229
[OGOL] human gut metagenome; faeces
131
37
-
Ser
CGA
[ENA]
¢þ
>WENV181687838
OGOX01006345
[OGOX] human gut metagenome; faeces
1692
1598
-
Ser
CGA
[ENA]
¢þ
>WENV181718974
OGPT01102396
[OGPT] human gut metagenome; faeces
142
236
+
Ser
CGA
[ENA]
¢þ
>WENV181727680
OGQA01002466
[OGQA] human gut metagenome; faeces
6228
6322
+
Ser
CGA
[ENA]
¢þ
>WENV181765438
OGQY01014863
[OGQY] human gut metagenome; faeces
425
519
+
Ser
CGA
[ENA]
¢þ
>WENV181772667
OGRD01010638
[OGRD] human gut metagenome; faeces
536
630
+
Ser
CGA
[ENA]
¢þ
>WENV181785473
OGRM01034287
[OGRM] human gut metagenome; faeces
491
397
-
Ser
CGA
[ENA]
¢þ
>WENV181874821
OGXA01085790
[OGXA] human gut metagenome; faeces
227
133
-
Ser
CGA
[ENA]
¢þ
>WENV181877435
OGXD01008419
[OGXD] human gut metagenome; faeces
1843
1749
-
Ser
CGA
[ENA]
¢þ
>WENV181883782
OGXI01012356
[OGXI] human gut metagenome; faeces
226
132
-
Ser
CGA
[ENA]
¢þ
>WENV181885479
OGXJ01023556
[OGXJ] human gut metagenome; faeces
202
296
+
Ser
CGA
[ENA]
¢þ
>WENV181902760
OGXW01098893
[OGXW] human gut metagenome; faeces
206
112
-
Ser
CGA
[ENA]
¢þ
>WENV181902971
OGXX01000179
[OGXX] human gut metagenome; faeces
5710
5804
+
Ser
CGA
[ENA]
¢þ
>WENV181906991
OGXZ01016407
[OGXZ] human gut metagenome; faeces
1570
1476
-
Ser
CGA
[ENA]
¢þ
>WENV181913532
OGYE01011373
[OGYE] human gut metagenome; faeces
1832
1738
-
Ser
CGA
[ENA]
¢þ
>WENV181929325
OGYO01018888
[OGYO] human gut metagenome; faeces
320
414
+
Ser
CGA
[ENA]
¢þ
>WENV181942565
OGYZ01000464
[OGYZ] human gut metagenome; faeces
29073
28979
-
Ser
CGA
[ENA]
¢þ
>WENV181953183
OGZI01003474
[OGZI] human gut metagenome; faeces
6191
6097
-
Ser
CGA
[ENA]
¢þ
>WENV181955222
OGZK01001991
[OGZK] human gut metagenome; faeces
317
411
+
Ser
CGA
[ENA]
¢þ
>WENV181960585
OGZO01000409
[OGZO] human gut metagenome; faeces
2763
2857
+
Ser
CGA
[ENA]
¢þ
>WENV181973308
OHAA01025421
[OHAA] human gut metagenome; faeces
527
621
+
Ser
CGA
[ENA]
¢þ
>WENV181980467
OHAF01036548
[OHAF] human gut metagenome; faeces
1171
1077
-
Ser
CGA
[ENA]
¢þ
>WENV181984760
OHAI01062239
[OHAI] human gut metagenome; faeces
377
283
-
Ser
CGA
[ENA]
¢þ
>WENV181985316
OHAJ01001830
[OHAJ] human gut metagenome; faeces
9136
9042
-
Ser
CGA
[ENA]
¢þ
>WENV181991576
OHAQ01003536
[OHAQ] human gut metagenome; faeces
9665
9759
+
Ser
CGA
[ENA]
¢þ
>WENV182009480
OHBJ01018678
[OHBJ] human gut metagenome; faeces
2379
2285
-
Ser
CGA
[ENA]
¢þ
>WENV182012213
OHBM01012357
[OHBM] human gut metagenome; faeces
318
412
+
Ser
CGA
[ENA]
¢þ
>WENV182061453
OHET01039968
[OHET] human gut metagenome; feces
306
400
+
Ser
CGA
[ENA]
¢þ
>WENV182108465
OHIL01046418
[OHIL] human gut metagenome; feces
227
133
-
Ser
CGA
[ENA]
¢þ
>WENV182196634
OHPF01039968
[OHPF] human gut metagenome; feces
306
400
+
Ser
CGA
[ENA]
¢þ
>WENV182343716
OIAK01040771
[OIAK] human gut metagenome; feces
191
97
-
Ser
CGA
[ENA]
¢þ
>WENV182363032
OICE01021558
[OICE] human gut metagenome; feces
164
258
+
Ser
CGA
[ENA]
¢þ
>WENV182439605
OIJT01008146
[OIJT] human gut metagenome; human gut
298
205
-
Ser
CGA
[ENA]
¢þ
>WENV182509706
OIWK01000017
[OIWK] human gut metagenome; faeces
106753
106659
-
Ser
CGA
[ENA]
¢þ
>WENV182523676
OIWS01027960
[OIWS] human gut metagenome; faeces
538
632
+
Ser
CGA
[ENA]
¢þ
>WENV182654998
OJMI01014727
[OJMI] human gut metagenome; feces
2822
2728
-
Ser
CGA
[ENA]
¢þ
>WENV182693765
OJOH01005119
[OJOH] human gut metagenome; stool sample
3566
3472
-
Ser
CGA
[ENA]
¢þ
>WENV182699571
OJON01060357
[OJON] human gut metagenome; human gut
603
509
-
Ser
CGA
[ENA]
¢þ
>WENV182720141
OJPN01003839
[OJPN] human gut metagenome; stool sample
471
565
+
Ser
CGA
[ENA]
¢þ
>WENV182725725
OJPT01013911
[OJPT] human gut metagenome; stool sample
890
984
+
Ser
CGA
[ENA]
¢þ
>WENV182739323
OJQK01031545
[OJQK] human gut metagenome; stool sample
164
258
+
Ser
CGA
[ENA]
¢þ
>WENV182745152
OJQS01027363
[OJQS] human gut metagenome; stool sample
272
366
+
Ser
CGA
[ENA]
¢þ
>WENV182869645
OKRT01011403
[OKRT] human gut metagenome; faeces
2015
1921
-
Ser
CGA
[ENA]
¢þ
>WENV182881674
OKSA01023681
[OKSA] human gut metagenome; faeces
146
52
-
Ser
CGA
[ENA]
¢þ
>WENV182888582
OKSE01001300
[OKSE] human gut metagenome; faeces
9014
8920
-
Ser
CGA
[ENA]
¢þ
>WENV182897163
OKSO01029733
[OKSO] human gut metagenome; feces
434
340
-
Ser
CGA
[ENA]
¢þ
>WENV182902590
OKSW01022118
[OKSW] human gut metagenome; feces
55
149
+
Ser
CGA
[ENA]
¢þ
>WENV183026756
OLFU01004444
[OLFU] human gut metagenome; faeces
2465
2371
-
Ser
CGA
[ENA]
¢þ
>WENV183028154
OLFV01001139
[OLFV] human gut metagenome; faeces
615
521
-
Ser
CGA
[ENA]
¢þ
>WENV183028678
OLFV01004860
[OLFV] human gut metagenome; faeces
4590
4496
-
Ser
CGA
[ENA]
¢þ
>WENV183033286
OLFY01002461
[OLFY] human gut metagenome; faeces
12702
12608
-
Ser
CGA
[ENA]
¢þ
>WENV183034312
OLFZ01000010
[OLFZ] human gut metagenome; faeces
171172
171078
-
Ser
CGA
[ENA]
¢þ
>WENV183270752
OLRV01019511
[OLRV] human gut metagenome; faeces
2314
2408
+
Ser
CGA
[ENA]
¢þ
>WENV183331275
OLWB01085571
[OLWB] human gut metagenome; faeces
47
141
+
Ser
CGA
[ENA]
¢þ
>WENV183339812
OLWL01000590
[OLWL] human gut metagenome; feces
23545
23639
+
Ser
CGA
[ENA]
¢þ
>WENV183360479
OLXI01025996
[OLXI] human gut metagenome; feces
826
732
-
Ser
CGA
[ENA]
¢þ
>WENV183377347
OLYB01014134
[OLYB] human gut metagenome; feces
938
844
-
Ser
CGA
[ENA]
¢þ
>WENV183462291
OMDW01002062
[OMDW] human gut metagenome; feces
238
144
-
Ser
CGA
[ENA]
¢þ
>WENV183518526
OMNQ01010460
[OMNQ] human gut metagenome; feces
509
603
+
Ser
CGA
[ENA]
¢þ
>WENV183540186
OOAJ01004113
[OOAJ] human gut metagenome; human gut
1804
1898
+
Ser
CGA
[ENA]
¢þ
>WENV183574905
OOCI01000107
[OOCI] human gut metagenome; human gut
14273
14179
-
Ser
CGA
[ENA]
¢þ
>WENV183579486
OOCM01001135
[OOCM] human gut metagenome; human gut
2649
2743
+
Ser
CGA
[ENA]
¢þ
>WENV183584629
OOCQ01062437
[OOCQ] human gut metagenome; human gut
481
387
-
Ser
CGA
[ENA]
¢þ
>WENV183600920
OODJ01000058
[OODJ] human gut metagenome; human gut
114248
114154
-
Ser
CGA
[ENA]
¢þ
>WENV183632706
OOIF01011978
[OOIF] human gut metagenome; human gut
1625
1531
-
Ser
CGA
[ENA]
¢þ
>WENV183633671
OOIG01001754
[OOIG] human gut metagenome; human gut
9402
9308
-
Ser
CGA
[ENA]
¢þ
>WENV170026192
CDTW01024519
[CDTW] gut metagenome; human stools
838
744
-
Ser
CGA
[ENA]
¢þ
>WENV170035108
CDYM01002509
[CDYM] gut metagenome; human stools
131
37
-
Ser
CGA
[ENA]
¢þ
>WENV170053220
CDZD01015427
[CDZD] gut metagenome; human stools
369
463
+
Ser
CGA
[ENA]
¢þ
>WENV170057501
CDZG01040518
[CDZG] gut metagenome; human stools
1397
1303
-
Ser
CGA
[ENA]
¢þ
>WENV170059088
CDZH01033800
[CDZH] gut metagenome; human stools
11771
11677
-
Ser
CGA
[ENA]
¢þ
>WENV170075587
CDZT01040465
[CDZT] gut metagenome; human stools
10298
10204
-
Ser
CGA
[ENA]
¢þ
>WENV170076539
CDZU01006344
[CDZU] gut metagenome; human stools
18469
18375
-
Ser
CGA
[ENA]
¢þ
>WENV170078390
CDZV01022858
[CDZV] gut metagenome; human stools
6042
6136
+
Ser
CGA
[ENA]
¢þ
>WENV170091040
CEAF01068387
[CEAF] gut metagenome; human stools
97
3
-
Ser
CGA
[ENA]
¢þ
>C181081056
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2709873
2709967
+
Ser
CGA
-
¡û
>W09106240
AATW01000008
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
130527
130621
+
Ser
CGA
[ENA]
¡û
>W09112389
ABXU01000076
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
7344
7250
-
Ser
CGA
[ENA]
¡û
>W09134063
ACQX01000005
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
26924
27018
+
Ser
CGA
[ENA]
¡û
>W1910182270
BJMT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
34039
33945
-
Ser
CGA
[ENA]
¡û
>C11107436
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
1987045
1987139
+
Ser
CGA
[Ensembl]
¡û
>W1710579854
FPIW01000011
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
71073
71167
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK