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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34674 (48 seq.)
>W1710871522
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
250491
250402
-
Ser
GGA
[ENA]
¡û
>W1711187541
LWPO01000072
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
89330
89241
-
Ser
GGA
[ENA]
¡û
>W1711271244
LZEW01000001
Gammaproteobacteria
Morganella psychrotolerans [LZEW]
964881
964970
+
Ser
GGA
[ENA]
¡û
>W1711271355
LZEY01000006
Gammaproteobacteria
Morganella psychrotolerans [LZEY]
65894
65983
+
Ser
GGA
[ENA]
¡û
>W1711680269
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
44182
44093
-
Ser
GGA
[ENA]
¡û
>W1711680270
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
43895
43806
-
Ser
GGA
[ENA]
¡û
>WENV180138051
OATP01003829
[OATP] human gut metagenome; faeces
2948
2859
-
Ser
GGA
[ENA]
¢þ
>WENV180143637
OATY01000019
[OATY] human gut metagenome; faeces
68672
68761
+
Ser
GGA
[ENA]
¢þ
>WENV180143638
OATY01000019
[OATY] human gut metagenome; faeces
69508
69597
+
Ser
GGA
[ENA]
¢þ
>W141264892
CCES01000028
Gammaproteobacteria
Serratia symbiotica [CCES]
207180
207091
-
Ser
GGA
[ENA]
¡û
>WENV170707921
LNAP01039904
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1820
1909
+
Ser
GGA
[ENA]
¢þ
>C181035804
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
768492
768403
-
Ser
GGA
-
¡û
>C191087437
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1816266
1816177
-
Ser
GGA
-
¡û
>C191126474
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
1757470
1757381
-
Ser
GGA
-
¡û
>C191126550
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1758167
1758078
-
Ser
GGA
-
¡û
>C191126627
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1905061
1904972
-
Ser
GGA
-
¡û
>C191151788
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
4515855
4515766
-
Ser
GGA
-
¡û
>W141710714
JMPO01000023
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
16683
16594
-
Ser
GGA
[ENA]
¡û
>W141816147
JQJR01000001
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
26059
26148
+
Ser
GGA
[ENA]
¡û
>W1910584869
JYDE01000004
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
135260
135349
+
Ser
GGA
[ENA]
¡û
>W1910584969
JYDG01000027
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
42682
42771
+
Ser
GGA
[ENA]
¡û
>W1910655786
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
1528613
1528702
+
Ser
GGA
[ENA]
¡û
>W1910696169
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
286583
286494
-
Ser
GGA
[ENA]
¡û
>W1910750398
MJIB01000004
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
294394
294305
-
Ser
GGA
[ENA]
¡û
>W1911239322
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2650468
2650379
-
Ser
GGA
[ENA]
¡û
>W1911397609
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3635057
3635146
+
Ser
GGA
[ENA]
¡û
>W1911397610
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3637101
3637190
+
Ser
GGA
[ENA]
¡û
>W1911686157
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
2411101
2411012
-
Ser
GGA
[ENA]
¡û
>W1911693633
QLTF01000005
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
135437
135348
-
Ser
GGA
[ENA]
¡û
>W1911824509
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
70424
70513
+
Ser
GGA
[ENA]
¡û
>W1810150007
PITQ01000008
Gammaproteobacteria
Rahnella sp. AA [PITQ]
244253
244342
+
Ser
GGA
[ENA]
¡û
>W1810181845
PJZF01000007
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
178750
178661
-
Ser
GGA
[ENA]
¡û
>W1810182086
PJZI01000042
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
40742
40653
-
Ser
GGA
[ENA]
¡û
>W1810182156
PJZJ01000037
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
44809
44720
-
Ser
GGA
[ENA]
¡û
>C11118367
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
1845218
1845129
-
Ser
GGA
[Ensembl]
¡û
>W1511433741
JUHL01000007
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
43116
43205
+
Ser
GGA
[ENA]
¡û
>W1511433812
JUHM01000009
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
179539
179450
-
Ser
GGA
[ENA]
¡û
>W1511586350
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
95954
96043
+
Ser
GGA
[ENA]
¡û
>W1511586351
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
98047
98136
+
Ser
GGA
[ENA]
¡û
>C121009659
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
1870692
1870603
-
Ser
GGA
[Ensembl]
¡û
>C121012513
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1796165
1796076
-
Ser
GGA
[Ensembl]
¡û
>C161074230
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2073396
2073307
-
Ser
GGA
-
¡û
>C161074231
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2072573
2072484
-
Ser
GGA
-
¡û
>W1610733868
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
250491
250402
-
Ser
GGA
[ENA]
¡û
>W1610994942
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
101844
101933
+
Ser
GGA
[ENA]
¡û
>W1610994943
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
102667
102756
+
Ser
GGA
[ENA]
¡û
>W1611030808
LZEW01000001
Gammaproteobacteria
Morganella psychrotolerans [LZEW]
964881
964970
+
Ser
GGA
[ENA]
¡û
>W1611030919
LZEY01000006
Gammaproteobacteria
Morganella psychrotolerans [LZEY]
65894
65983
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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