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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347438 (57 seq.)
>W1710865874
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
577325
577251
-
Gln
CTG
[ENA]
¡û
>W1710872119
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279386
279460
+
Gln
CTG
[ENA]
¡û
>W1710872120
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279566
279640
+
Gln
CTG
[ENA]
¡û
>W1711147370
LVJP01001113
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
9
83
+
Gln
CTG
[ENA]
¡û
>W1711147572
LVJT01000013
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
89489
89563
+
Gln
CTG
[ENA]
¡û
>W131244888
CAQP01000119
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
1479
1553
+
Gln
CTG
[ENA]
¡û
>W1711386591
MEFO01000025
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
27191
27265
+
Gln
CTG
[ENA]
¡û
>W1711506475
MKWK01000027
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
77909
77983
+
Gln
CTG
[ENA]
¡û
>W1711711479
MTAY01000008
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
79238
79164
-
Gln
CTG
[ENA]
¡û
>WENV182941650
OKVG01004585
[OKVG] human gut metagenome; human gut
2440
2366
-
Gln
CTG
[ENA]
¢þ
>WENV182944095
OKVI01003790
[OKVI] human gut metagenome; human gut
3150
3076
-
Gln
CTG
[ENA]
¢þ
>WENV183732340
PJTX01000032
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
79367
79441
+
Gln
CTG
[ENA]
¢þ
>WENV183734814
PJUA01000025
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
190506
190580
+
Gln
CTG
[ENA]
¢þ
>WENV183738874
PJUE01000331
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
36460
36534
+
Gln
CTG
[ENA]
¢þ
>WENV183738875
PJUE01000331
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
36636
36710
+
Gln
CTG
[ENA]
¢þ
>WENV183740053
PJUF01000224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
48180
48254
+
Gln
CTG
[ENA]
¢þ
>WENV183740054
PJUF01000224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
48356
48430
+
Gln
CTG
[ENA]
¢þ
>WENV170009883
APMI01004467
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
914
988
+
Gln
CTG
[ENA]
¢þ
>WENV170010814
APMI01029940
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1681
1755
+
Gln
CTG
[ENA]
¢þ
>WENV170011538
APMI01072772
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5871
5797
-
Gln
CTG
[ENA]
¢þ
>WENV170661294
JXWU01153362
[JXWU] soil metagenome; rice field; organic control Plot
26
100
+
Gln
CTG
[ENA]
¢þ
>WENV170681039
LFEF01045538
[LFEF] freshwater metagenome; waterbloom
222
148
-
Gln
CTG
[ENA]
¢þ
>WENV170966656
MTEY01002725
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
194
120
-
Gln
CTG
[ENA]
¢þ
>C181000987
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1080585
1080659
+
Gln
CTG
-
¡û
>C181039134
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
3134197
3134271
+
Gln
CTG
-
¡û
>C191181051
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
4999445
4999371
-
Gln
CTG
-
¡û
>W1911708908
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1202550
1202476
-
Gln
CTG
[ENA]
¡û
>W1911708909
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1202373
1202299
-
Gln
CTG
[ENA]
¡û
>W1810514379
QBUW01000009
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
124924
124850
-
Gln
CTG
[ENA]
¡û
>C161031535
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
1220316
1220390
+
Gln
CTG
[Ensembl]
¡û
>C161047154
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
3487340
3487414
+
Gln
CTG
[Ensembl]
¡û
>C161052033
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
4806516
4806442
-
Gln
CTG
[Ensembl]
¡û
>C161070299
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
3664383
3664457
+
Gln
CTG
[Ensembl]
¡û
>C161070300
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
3664571
3664645
+
Gln
CTG
[Ensembl]
¡û
>W1610027345
AVPU01000007
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
48966
49040
+
Gln
CTG
[ENA]
¡û
>W1610586756
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129979
129905
-
Gln
CTG
[ENA]
¡û
>W1610586757
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129799
129725
-
Gln
CTG
[ENA]
¡û
>W1610586911
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26261
26335
+
Gln
CTG
[ENA]
¡û
>W1610586912
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26440
26514
+
Gln
CTG
[ENA]
¡û
>W1610587136
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94317
94243
-
Gln
CTG
[ENA]
¡û
>W1610587137
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94152
94078
-
Gln
CTG
[ENA]
¡û
>W1610587273
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23306
23380
+
Gln
CTG
[ENA]
¡û
>W1610728220
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
577325
577251
-
Gln
CTG
[ENA]
¡û
>W1610734465
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279386
279460
+
Gln
CTG
[ENA]
¡û
>W1610734466
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279566
279640
+
Gln
CTG
[ENA]
¡û
>W1610958323
LVJP01001113
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
9
83
+
Gln
CTG
[ENA]
¡û
>W1610958525
LVJT01000013
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
89489
89563
+
Gln
CTG
[ENA]
¡û
>W1710023579
AVPU01000007
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
48966
49040
+
Gln
CTG
[ENA]
¡û
>W1710529732
FNOG01000001
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
518214
518288
+
Gln
CTG
[ENA]
¡û
>W1710531726
FNPT01000004
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
60743
60817
+
Gln
CTG
[ENA]
¡û
>W1710705886
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129979
129905
-
Gln
CTG
[ENA]
¡û
>W1710705887
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129799
129725
-
Gln
CTG
[ENA]
¡û
>W1710706041
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26261
26335
+
Gln
CTG
[ENA]
¡û
>W1710706042
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26440
26514
+
Gln
CTG
[ENA]
¡û
>W1710706266
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94317
94243
-
Gln
CTG
[ENA]
¡û
>W1710706267
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94152
94078
-
Gln
CTG
[ENA]
¡û
>W1710706403
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23306
23380
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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