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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347440 (68 seq.)
>W1710866454
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
138677
138751
+
Val
CAC
[ENA]
¡û
>W1710916615
LNVL01000010
Gammaproteobacteria
Xanthomonas translucens [LNVL]
61081
61155
+
Val
CAC
[ENA]
¡û
>W1710917138
LNVV01000004
Gammaproteobacteria
Xanthomonas translucens [LNVV]
61235
61309
+
Val
CAC
[ENA]
¡û
>W1711055818
LRVF01000075
Gammaproteobacteria
Xylella fastidiosa [LRVF]
19405
19331
-
Val
CAC
[ENA]
¡û
>W1711055861
LRVG01000055
Gammaproteobacteria
Xylella fastidiosa [LRVG]
11729
11803
+
Val
CAC
[ENA]
¡û
>W1711055920
LRVH01000163
Gammaproteobacteria
Xylella fastidiosa [LRVH]
16356
16282
-
Val
CAC
[ENA]
¡û
>W1711056024
LRVJ01000163
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
33207
33281
+
Val
CAC
[ENA]
¡û
>W1711134809
LUYB01000002
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
212809
212883
+
Val
CAC
[ENA]
¡û
>W1711297255
MADU01000052
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADU]
12806
12880
+
Val
CAC
[ENA]
¡û
>W1711297333
MADV01001401
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADV]
750
824
+
Val
CAC
[ENA]
¡û
>W131244892
CAQP01000147
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
6973
7047
+
Val
CAC
[ENA]
¡û
>W1711484699
MKCZ01000053
Gammaproteobacteria
Stenotrophomonas sp. BIIR7 [MKCZ]
27402
27328
-
Val
CAC
[ENA]
¡û
>W1711711477
MTAY01000005
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
141958
142032
+
Val
CAC
[ENA]
¡û
>C171046763
CP016294
Gammaproteobacteria
Stenotrophomonas rhizophila QL-P4 [CP016294]
1203386
1203460
+
Val
CAC
-
¡û
>W131221324
AUAJ01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
79063
78989
-
Val
CAC
[ENA]
¡û
>C027217
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
1738264
1738190
-
Val
CAC
[Ensembl]
¡û
>w001682
AAAM03000044
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
11519
11448
-
Val
CAC
[ENA]
¡û
>w001652
AAAM03000010
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
35509
35583
+
Val
CAC
[ENA]
¡û
>w001590
AAAL02000001
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
100112
100041
-
Val
CAC
[ENA]
¡û
>WENV180693694
OCZS011463098
[OCZS] soil metagenome; soil
62
136
+
Val
CAC
[ENA]
¢þ
>WENV181192945
OEPS011244543
[OEPS] soil metagenome; soil
130
204
+
Val
CAC
[ENA]
¢þ
>W141148588
AWYH01000011
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
11975
12049
+
Val
CAC
[ENA]
¡û
>W141152281
AXBS01000011
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
11911
11985
+
Val
CAC
[ENA]
¡û
>W141153652
AXDP01000002
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
117200
117274
+
Val
CAC
[ENA]
¡û
>C08011561
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
1711068
1710997
-
Val
CAC
[Ensembl]
¡û
>W141282833
JAJA01000017
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
73490
73416
-
Val
CAC
[ENA]
¡û
>WENV182944265
OKVI01010581
[OKVI] human gut metagenome; human gut
873
947
+
Val
CAC
[ENA]
¢þ
>WENV170010315
APMI01013450
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9991
9917
-
Val
CAC
[ENA]
¢þ
>WENV170010484
APMI01018330
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
678
604
-
Val
CAC
[ENA]
¢þ
>WENV170010485
APMI01018331
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
610
684
+
Val
CAC
[ENA]
¢þ
>WENV170010593
APMI01021759
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1448
1522
+
Val
CAC
[ENA]
¢þ
>WENV170708007
LNAP01043943
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1375
1301
-
Val
CAC
[ENA]
¢þ
>C181001035
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
2396840
2396766
-
Val
CAC
-
¡û
>C181007941
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
649094
649168
+
Val
CAC
-
¡û
>C181008085
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
605354
605428
+
Val
CAC
-
¡û
>C181020191
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
590918
590992
+
Val
CAC
-
¡û
>C181081830
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2438734
2438660
-
Val
CAC
-
¡û
>C181200087
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1009031
1008957
-
Val
CAC
-
¡û
>C191181046
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
3572438
3572512
+
Val
CAC
-
¡û
>C191183320
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
34339
34265
-
Val
CAC
-
¡û
>W141699113
JMHP01000010
Gammaproteobacteria
Xylella fastidiosa [JMHP]
263686
263760
+
Val
CAC
[ENA]
¡û
>W141713904
JMTZ01000022
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
107709
107783
+
Val
CAC
[ENA]
¡û
>W1911582065
PHFQ01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
78604
78530
-
Val
CAC
[ENA]
¡û
>W1911582209
PHFT01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
78605
78531
-
Val
CAC
[ENA]
¡û
>W1911710172
QPQV01000108
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
12004
12078
+
Val
CAC
[ENA]
¡û
>W1911726700
QTJS01000010
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
65991
65917
-
Val
CAC
[ENA]
¡û
>W1911752135
QWLC01000095
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
12548
12622
+
Val
CAC
[ENA]
¡û
>SRA1002275
SRR001308.343264
Metagenomic characterization of a wastewater treatment plant (SRP000180)
116
189
+
Val
CAC
[SRA]
>W1810195336
PKQQ01000004
Gammaproteobacteria
Stenotrophomonas sp. VV52 [PKQQ]
221758
221684
-
Val
CAC
[ENA]
¡û
>C151011705
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
1475441
1475367
-
Val
CAC
[Ensembl]
¡û
>W1510720009
CXOK01000029
Gammaproteobacteria
Xanthomonas translucens pv. poae [CXOK]
22722
22648
-
Val
CAC
[ENA]
¡û
>W1511320750
JQAP01000014
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
427209
427135
-
Val
CAC
[ENA]
¡û
>C11123993
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
345525
345451
-
Val
CAC
[Ensembl]
¡û
>W1511595017
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
697029
696955
-
Val
CAC
[ENA]
¡û
>C161031579
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
2539229
2539155
-
Val
CAC
[Ensembl]
¡û
>C161031628
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2453781
2453707
-
Val
CAC
[Ensembl]
¡û
>C161031640
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3346030
3346104
+
Val
CAC
[Ensembl]
¡û
>C161052028
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3376715
3376789
+
Val
CAC
[Ensembl]
¡û
>C161052076
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
1692634
1692708
+
Val
CAC
-
¡û
>W1610728800
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
138677
138751
+
Val
CAC
[ENA]
¡û
>W1610774651
LNVL01000010
Gammaproteobacteria
Xanthomonas translucens [LNVL]
61081
61155
+
Val
CAC
[ENA]
¡û
>W1610775174
LNVV01000004
Gammaproteobacteria
Xanthomonas translucens [LNVV]
61235
61309
+
Val
CAC
[ENA]
¡û
>W1610896864
LRVF01000075
Gammaproteobacteria
Xylella fastidiosa [LRVF]
19405
19331
-
Val
CAC
[ENA]
¡û
>W1610896907
LRVG01000055
Gammaproteobacteria
Xylella fastidiosa [LRVG]
11729
11803
+
Val
CAC
[ENA]
¡û
>W1610896966
LRVH01000163
Gammaproteobacteria
Xylella fastidiosa [LRVH]
16356
16282
-
Val
CAC
[ENA]
¡û
>W1610897070
LRVJ01000163
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
33207
33281
+
Val
CAC
[ENA]
¡û
>W1710529757
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
281958
281884
-
Val
CAC
[ENA]
¡û
>W1710531694
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
489138
489212
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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