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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347462 (123 seq.)
>W1712102976
NIOF01000009
Betaproteobacteria
Roseateles aquatilis [NIOF]
164904
164979
+
Thr
CGT
[ENA]
¡û
>W131214627
ATUI01000019
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
31611
31536
-
Thr
CGT
[ENA]
¡û
>C013923
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
2958697
2958772
+
Thr
CGT
[Ensembl]
¡û
>WENV180011936
FLSK01099105
[FLSK] metagenome; saliva
65
140
+
Thr
CGT
[ENA]
¢þ
>WENV180125136
OASY01000911
[OASY] human gut metagenome; faeces
11640
11565
-
Thr
CGT
[ENA]
¢þ
>WENV180148678
OAUK01001443
[OAUK] human gut metagenome; faeces
7972
7897
-
Thr
CGT
[ENA]
¢þ
>WENV180225997
OBBP01015170
[OBBP] human oral metagenome; human oral
110
185
+
Thr
CGT
[ENA]
¢þ
>WENV180731747
ODGW01009734
[ODGW] human metagenome; G_DNA_Supragingival plaque
675
600
-
Thr
CGT
[ENA]
¢þ
>WENV180746307
ODHM01054197
[ODHM] human metagenome; G_DNA_Buccal mucosa
221
146
-
Thr
CGT
[ENA]
¢þ
>WENV180749970
ODHS01000195
[ODHS] human metagenome; G_DNA_Supragingival plaque
14485
14560
+
Thr
CGT
[ENA]
¢þ
>WENV180759624
ODHY01054058
[ODHY] human metagenome; G_DNA_Buccal mucosa
282
207
-
Thr
CGT
[ENA]
¢þ
>WENV180776186
ODIK01020805
[ODIK] human metagenome; G_DNA_Tongue dorsum
177
252
+
Thr
CGT
[ENA]
¢þ
>WENV180777732
ODIL01067550
[ODIL] human metagenome; G_DNA_Supragingival plaque
203
278
+
Thr
CGT
[ENA]
¢þ
>WENV180778540
ODIM01014031
[ODIM] human metagenome; G_DNA_Supragingival plaque
401
326
-
Thr
CGT
[ENA]
¢þ
>WENV180787470
ODIS01006800
[ODIS] human metagenome; G_DNA_Supragingival plaque
561
486
-
Thr
CGT
[ENA]
¢þ
>WENV180803631
ODJG01000007
[ODJG] human metagenome; G_DNA_Supragingival plaque
171592
171517
-
Thr
CGT
[ENA]
¢þ
>WENV180804783
ODJG01012781
[ODJG] human metagenome; G_DNA_Supragingival plaque
1732
1657
-
Thr
CGT
[ENA]
¢þ
>WENV180806360
ODJH01012564
[ODJH] human metagenome; G_DNA_Tongue dorsum
922
847
-
Thr
CGT
[ENA]
¢þ
>WENV180814351
ODJO01014108
[ODJO] human metagenome; G_DNA_Supragingival plaque
2576
2501
-
Thr
CGT
[ENA]
¢þ
>WENV180824692
ODJX01027752
[ODJX] human metagenome; G_DNA_Supragingival plaque
293
368
+
Thr
CGT
[ENA]
¢þ
>WENV180831707
ODKC01000043
[ODKC] human metagenome; G_DNA_Supragingival plaque
63447
63372
-
Thr
CGT
[ENA]
¢þ
>WENV180833937
ODKD01001067
[ODKD] human metagenome; G_DNA_Supragingival plaque
6800
6725
-
Thr
CGT
[ENA]
¢þ
>WENV180840918
ODKJ01017263
[ODKJ] human metagenome; G_DNA_Stool
776
701
-
Thr
CGT
[ENA]
¢þ
>WENV180843638
ODKN01006623
[ODKN] human metagenome; G_DNA_Supragingival plaque
3020
2945
-
Thr
CGT
[ENA]
¢þ
>WENV180846064
ODKT01004585
[ODKT] human metagenome; G_DNA_Supragingival plaque
6212
6287
+
Thr
CGT
[ENA]
¢þ
>WENV180847137
ODKT01044757
[ODKT] human metagenome; G_DNA_Supragingival plaque
1209
1134
-
Thr
CGT
[ENA]
¢þ
>WENV180859070
ODLD01000004
[ODLD] human metagenome; G_DNA_Supragingival plaque
81899
81974
+
Thr
CGT
[ENA]
¢þ
>WENV180862413
ODLE01116598
[ODLE] human metagenome; G_DNA_Tongue dorsum
138
213
+
Thr
CGT
[ENA]
¢þ
>WENV180913084
ODSR01008654
[ODSR] human metagenome; G_DNA_Buccal mucosa
360
285
-
Thr
CGT
[ENA]
¢þ
>WENV180923302
ODTJ01110760
[ODTJ] human metagenome; G_DNA_Supragingival plaque
157
232
+
Thr
CGT
[ENA]
¢þ
>WENV180933350
ODTR01000049
[ODTR] human metagenome; G_DNA_Supragingival plaque
46185
46260
+
Thr
CGT
[ENA]
¢þ
>WENV180934222
ODTR01055530
[ODTR] human metagenome; G_DNA_Supragingival plaque
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV180934441
ODTS01000068
[ODTS] human metagenome; G_DNA_Subgingival plaque
14491
14566
+
Thr
CGT
[ENA]
¢þ
>WENV180945197
ODUC01081731
[ODUC] human metagenome; G_DNA_Supragingival plaque
532
457
-
Thr
CGT
[ENA]
¢þ
>WENV180957986
ODUL01000080
[ODUL] human metagenome; G_DNA_Supragingival plaque
1201
1276
+
Thr
CGT
[ENA]
¢þ
>WENV180978683
ODVA01001359
[ODVA] human metagenome; G_DNA_Buccal mucosa
521
596
+
Thr
CGT
[ENA]
¢þ
>WENV180981101
ODVE01006930
[ODVE] human metagenome; G_DNA_Supragingival plaque
3271
3196
-
Thr
CGT
[ENA]
¢þ
>WENV180982554
ODVF01000088
[ODVF] human metagenome; G_DNA_Supragingival plaque
57978
58053
+
Thr
CGT
[ENA]
¢þ
>WENV181003048
ODVX01004096
[ODVX] human metagenome; G_DNA_Supragingival plaque
951
1026
+
Thr
CGT
[ENA]
¢þ
>WENV181007802
ODWE01000736
[ODWE] human metagenome; G_DNA_Supragingival plaque
1035
1110
+
Thr
CGT
[ENA]
¢þ
>WENV181008547
ODWE01007344
[ODWE] human metagenome; G_DNA_Supragingival plaque
3791
3716
-
Thr
CGT
[ENA]
¢þ
>WENV181018843
ODWU01000127
[ODWU] human metagenome; G_DNA_Supragingival plaque
1030
1105
+
Thr
CGT
[ENA]
¢þ
>WENV181064215
ODYP01014251
[ODYP] human metagenome; G_DNA_Supragingival plaque
1885
1810
-
Thr
CGT
[ENA]
¢þ
>WENV181070171
OEAE01000369
[OEAE] human metagenome; G_DNA_Supragingival plaque
14321
14246
-
Thr
CGT
[ENA]
¢þ
>WENV181070840
OEAE01014066
[OEAE] human metagenome; G_DNA_Supragingival plaque
95
20
-
Thr
CGT
[ENA]
¢þ
>WENV181079367
OEAS01005454
[OEAS] human metagenome; G_DNA_Supragingival plaque
6187
6112
-
Thr
CGT
[ENA]
¢þ
>WENV181083818
OEAV01025657
[OEAV] human metagenome; G_DNA_Supragingival plaque
1118
1043
-
Thr
CGT
[ENA]
¢þ
>WENV181101286
OECM01045612
[OECM] human metagenome; G_DNA_Buccal mucosa
112
37
-
Thr
CGT
[ENA]
¢þ
>WENV181121404
OEFL01003416
[OEFL] human metagenome; G_DNA_Supragingival plaque
4362
4287
-
Thr
CGT
[ENA]
¢þ
>WENV181123634
OEFQ01000132
[OEFQ] human metagenome; G_DNA_Supragingival plaque
5025
4950
-
Thr
CGT
[ENA]
¢þ
>WENV181137504
OEGJ01005206
[OEGJ] human metagenome; G_DNA_Supragingival plaque
495
570
+
Thr
CGT
[ENA]
¢þ
>WENV181143874
OEHM01019141
[OEHM] human metagenome; G_DNA_Supragingival plaque
337
412
+
Thr
CGT
[ENA]
¢þ
>WENV181161012
OEIK01088254
[OEIK] human metagenome; G_DNA_Supragingival plaque
115
40
-
Thr
CGT
[ENA]
¢þ
>WENV181177492
OEJS01003065
[OEJS] human metagenome; G_DNA_Supragingival plaque
545
620
+
Thr
CGT
[ENA]
¢þ
>WENV181182196
OEJV01003659
[OEJV] human metagenome; G_DNA_Supragingival plaque
5105
5030
-
Thr
CGT
[ENA]
¢þ
>WENV181183814
OEJW01008178
[OEJW] human metagenome; G_DNA_Stool
826
751
-
Thr
CGT
[ENA]
¢þ
>WENV181223051
OFDC01001473
[OFDC] hot springs metagenome; Water
5989
5914
-
Thr
CGT
[ENA]
¢þ
>WENV181446695
OGDU01000134
[OGDU] metagenome; Human gut stool
25585
25510
-
Thr
CGT
[ENA]
¢þ
>WENV181450253
OGDY01000257
[OGDY] metagenome; Human gut stool
72087
72162
+
Thr
CGT
[ENA]
¢þ
>WENV181457686
OGEI01005667
[OGEI] metagenome; Human gut stool
1894
1969
+
Thr
CGT
[ENA]
¢þ
>WENV181476419
OGFF01000005
[OGFF] metagenome; Human gut stool
402
327
-
Thr
CGT
[ENA]
¢þ
>WENV181488745
OGFR01000499
[OGFR] metagenome; Human gut stool
26580
26655
+
Thr
CGT
[ENA]
¢þ
>WENV181524956
OGHI01006212
[OGHI] metagenome; Human gut stool
361
436
+
Thr
CGT
[ENA]
¢þ
>WENV181555086
OGIT01000009
[OGIT] metagenome; Human gut stool
60917
60992
+
Thr
CGT
[ENA]
¢þ
>WENV181566063
OGJI01006939
[OGJI] metagenome; Human gut stool
4227
4302
+
Thr
CGT
[ENA]
¢þ
>WENV181568481
OGJK01002521
[OGJK] metagenome; Human gut stool
9642
9567
-
Thr
CGT
[ENA]
¢þ
>WENV181609635
OGLN01096602
[OGLN] metagenome; Human gut stool
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV181654868
OGOA01000829
[OGOA] metagenome; Human gut stool
10237
10312
+
Thr
CGT
[ENA]
¢þ
>WENV181755314
OGQS01001996
[OGQS] human gut metagenome; faeces
8012
7937
-
Thr
CGT
[ENA]
¢þ
>WENV181823205
OGUJ01000058
[OGUJ] metagenome; Human gut stool
94136
94211
+
Thr
CGT
[ENA]
¢þ
>WENV181867394
OGWW01000044
[OGWW] human gut metagenome; faeces
36619
36544
-
Thr
CGT
[ENA]
¢þ
>WENV181905878
OGXY01004093
[OGXY] human gut metagenome; faeces
5105
5180
+
Thr
CGT
[ENA]
¢þ
>WENV181945449
OGZB01008247
[OGZB] human gut metagenome; faeces
406
481
+
Thr
CGT
[ENA]
¢þ
>WENV181962581
OGZP01000328
[OGZP] human gut metagenome; faeces
35676
35751
+
Thr
CGT
[ENA]
¢þ
>WENV181966084
OGZT01033171
[OGZT] human gut metagenome; faeces
107
182
+
Thr
CGT
[ENA]
¢þ
>WENV181972955
OHAA01005805
[OHAA] human gut metagenome; faeces
2431
2506
+
Thr
CGT
[ENA]
¢þ
>W141214242
AZSN01000019
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
15064
15139
+
Thr
CGT
[ENA]
¡û
>WENV182189016
OHON01017133
[OHON] human gut metagenome; feces
134
59
-
Thr
CGT
[ENA]
¢þ
>WENV182224517
OHRB01019534
[OHRB] human gut metagenome; feces
442
517
+
Thr
CGT
[ENA]
¢þ
>WENV182662413
OJMN01043719
[OJMN] human gut metagenome; feces
416
491
+
Thr
CGT
[ENA]
¢þ
>WENV182887491
OKSD01006252
[OKSD] human gut metagenome; faeces
5416
5491
+
Thr
CGT
[ENA]
¢þ
>WENV183498624
OMGP01000154
[OMGP] human gut metagenome; human gut
60910
60985
+
Thr
CGT
[ENA]
¢þ
>WENV183548475
OOAY01000001
[OOAY] human gut metagenome; human gut
112854
112779
-
Thr
CGT
[ENA]
¢þ
>WENV183552851
OOBK01000001
[OOBK] human gut metagenome; human gut
393730
393805
+
Thr
CGT
[ENA]
¢þ
>WENV183574751
OOCI01000001
[OOCI] human gut metagenome; human gut
402
327
-
Thr
CGT
[ENA]
¢þ
>WENV183581183
OOCN01004673
[OOCN] human gut metagenome; human gut
3146
3221
+
Thr
CGT
[ENA]
¢þ
>WENV183585511
OOCS01000012
[OOCS] human gut metagenome; human gut
112807
112732
-
Thr
CGT
[ENA]
¢þ
>WENV170018784
BBPD01000890
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
15018
15093
+
Thr
CGT
[ENA]
¢þ
>WENV170019918
BBPE01001437
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14565
14640
+
Thr
CGT
[ENA]
¢þ
>WENV170034401
CDYL01002200
[CDYL] gut metagenome; human stools
1554
1479
-
Thr
CGT
[ENA]
¢þ
>WENV170551367
CXWJ01005592
[CXWJ] wastewater metagenome; activated sludge
3556
3631
+
Thr
CGT
[ENA]
¢þ
>WENV170651087
JRYF01000571
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
8906
8981
+
Thr
CGT
[ENA]
¢þ
>WENV170651358
JRYF01008710
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
283
208
-
Thr
CGT
[ENA]
¢þ
>WENV170653673
JRYJ01032866
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
873
948
+
Thr
CGT
[ENA]
¢þ
>WENV170654156
JRYK01017108
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
279
354
+
Thr
CGT
[ENA]
¢þ
>W09101389
AAEM01000004
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
221659
221734
+
Thr
CGT
[ENA]
¡û
>C193000135
AP018786
Betaproteobacteria
Sutterella megalosphaeroides 6FBBBH3 [AP018786]
2640062
2639987
-
Thr
CGT
-
¡û
>C193002993
CP040882
Betaproteobacteria
Sutterella faecalis KGMB03119 [CP040882]
1600041
1599966
-
Thr
CGT
-
¡û
>W1910128629
BHWA01000009
Betaproteobacteria
Mesosutterella multiformis KCTC 15688 [BHWA]
157949
157874
-
Thr
CGT
[ENA]
¡û
>W1911701425
QNUI01000014
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
9168
9093
-
Thr
CGT
[ENA]
¡û
>W1911702193
QOAZ01000041
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
21080
21005
-
Thr
CGT
[ENA]
¡û
>W1911740725
QUSW01000002
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
497241
497316
+
Thr
CGT
[ENA]
¡û
>W1810811702
QRYJ01000013
Betaproteobacteria
Sutterella sp. AF15-45LB [QRYJ]
75944
76019
+
Thr
CGT
[ENA]
¡û
>W1810811757
QRYK01000013
Betaproteobacteria
Sutterella sp. AF15-44LB [QRYK]
1744
1669
-
Thr
CGT
[ENA]
¡û
>W1810884650
QUMT01000006
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
77726
77651
-
Thr
CGT
[ENA]
¡û
>C151081679
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
4681259
4681334
+
Thr
CGT
[Ensembl]
¡û
>W1530027940
LARC01000028
Betaproteobacteria
Burkholderia sp. K4410.MGS-135 [LARC]
10342
10267
-
Thr
CGT
[ENA]
¡û
>W1530027941
LARC01000028
Betaproteobacteria
Burkholderia sp. K4410.MGS-135 [LARC]
8942
8867
-
Thr
CGT
[ENA]
¡û
>W1510021364
BBYR01000042
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
67344
67419
+
Thr
CGT
[ENA]
¡û
>W11300549
ADMF01000036
Betaproteobacteria
Sutterella wadsworthensis 3_1_45B [ADMF]
27652
27727
+
Thr
CGT
[ENA]
¡û
>W11300550
ADMF01000036
Betaproteobacteria
Sutterella wadsworthensis 3_1_45B [ADMF]
29052
29127
+
Thr
CGT
[ENA]
¡û
>W1510651949
CVTY01000005
Betaproteobacteria
Dakarella massiliensis ND3 [CVTY]
389961
390036
+
Thr
CGT
[ENA]
¡û
>W11144208
AEQP01000001
Betaproteobacteria
Lautropia mirabilis ATCC 51599 [AEQP]
432981
432906
-
Thr
CGT
[ENA]
¡û
>W11150926
AEWG01000094
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
4332
4407
+
Thr
CGT
[ENA]
¡û
>C121001097
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1917390
1917465
+
Thr
CGT
[Ensembl]
¡û
>C161060277
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1893804
1893879
+
Thr
CGT
[Ensembl]
¡û
>W121060087
AJFF01000053
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
6705
6630
-
Thr
CGT
[ENA]
¡û
>W1610070227
BCTC01000007
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
70579
70504
-
Thr
CGT
[ENA]
¡û
>W1630017840
LTDB01000046
Betaproteobacteria
Sutterella sp. KLE1602 [LTDB]
1041
966
-
Thr
CGT
[ENA]
¡û
>W1730020533
LTDB01000046
Betaproteobacteria
Sutterella sp. KLE1602 [LTDB]
1041
966
-
Thr
CGT
[ENA]
¡û
>W1710067600
BCTC01000007
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
70579
70504
-
Thr
CGT
[ENA]
¡û
>W133004164
ATCF01000030
Betaproteobacteria
Sutterella wadsworthensis HGA0223 [ATCF]
74224
74149
-
Thr
CGT
[ENA]
¡û
>W133004165
ATCF01000030
Betaproteobacteria
Sutterella wadsworthensis HGA0223 [ATCF]
72824
72749
-
Thr
CGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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