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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347728 (21 seq.)
>WENV180241952
OBDI01036259
[OBDI] metagenome; diffuse fluid
264
338
+
Ala
TGC
[ENA]
¢þ
>W141220951
AZYH01000014
Bacteroidota
Saccharicrinis fermentans DSM 9555 = JCM 21142 [AZYH]
2641406
2641480
+
Ala
TGC
[ENA]
¡û
>WENV183716283
PDWI01298825
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
745
671
-
Ala
TGC
[ENA]
¢þ
>WENV183721910
PDWJ01093961
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
609
683
+
Ala
TGC
[ENA]
¢þ
>WENV170111984
CEGC01000229
[CEGC] microbial mat metagenome; grass silage
2070
2144
+
Ala
TGC
[ENA]
¢þ
>WENV170112108
CEGD01000559
[CEGD] microbial mat metagenome; grass silage
3719
3645
-
Ala
TGC
[ENA]
¢þ
>WENV170694770
LGVE01006835
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1949
2025
+
Ala
TGC
[ENA]
¢þ
>WENV170695199
LGVE01058772
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
285
211
-
Ala
TGC
[ENA]
¢þ
>WENV170697991
LGVF01234996
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
501
577
+
Ala
TGC
[ENA]
¢þ
>WENV170948793
MEHZ011282547
[MEHZ] marine metagenome; marine surface water
299
373
+
Ala
TGC
[ENA]
¢þ
>C181004348
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2393536
2393610
+
Ala
TGC
-
¡û
>C181004350
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2400534
2400608
+
Ala
TGC
-
¡û
>C181004356
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2653308
2653382
+
Ala
TGC
-
¡û
>C181004358
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2660305
2660379
+
Ala
TGC
-
¡û
>C181004364
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2822817
2822891
+
Ala
TGC
-
¡û
>C181004366
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2999200
2999274
+
Ala
TGC
-
¡û
>W1910812529
MVDE01000070
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
2137
2211
+
Ala
TGC
[ENA]
¡û
>W1911718328
QQWG01000041
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
2179
2253
+
Ala
TGC
[ENA]
¡û
>W1911737982
QTZN01000028
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
3310
3236
-
Ala
TGC
[ENA]
¡û
>W1810758882
QPIZ01000054
Bacteroidota
Marinilabilia salmonicolor 160A [QPIZ]
3079
3005
-
Ala
TGC
[ENA]
¡û
>W121063308
AJKI01000048
Bacteroidota
Marinilabilia salmonicolor JCM 21150 [AJKI]
156
82
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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