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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348194 (5 seq.)
>W1510016104
BBRZ01000066
Gammaproteobacteria
Vibrio ishigakensis JCM 19231 JCM19231 [BBRZ]
108
33
-
Arg
CCT
[ENA]
¡û
>W1510016126
BBSA01000003
Gammaproteobacteria
Vibrio ishigakensis JCM 19232 JCM19232 [BBSA]
188199
188274
+
Arg
CCT
[ENA]
¡û
>W1510016191
BBSB01000010
Gammaproteobacteria
Vibrio sp. JCM 19236 JCM 19236 JCM19236 [BBSB]
137199
137124
-
Arg
CCT
[ENA]
¡û
>W1510016227
BBSC01000001
Gammaproteobacteria
Vibrio ishigakensis JCM 19241 JCM19241 [BBSC]
466784
466859
+
Arg
CCT
[ENA]
¡û
>C231007175
AP024881
Gammaproteobacteria
Vibrio ishigakensis JCM 19231 [AP024881, AP024882]
1994693
1994618
-
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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