This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348194 (19 seq.)
>W1711136512
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
103528
103603
+
Trp
CCA
[ENA]
¡û
>WENV180746948
ODHN01001067
[ODHN] human metagenome; G_DNA_Stool
3623
3698
+
Trp
CCA
[ENA]
¢þ
>WENV181136860
OEGI01097195
[OEGI] human metagenome; G_DNA_Supragingival plaque
220
295
+
Trp
CCA
[ENA]
¢þ
>WENV181450760
OGDY01001310
[OGDY] metagenome; Human gut stool
28423
28348
-
Trp
CCA
[ENA]
¢þ
>WENV182524623
OIWT01000401
[OIWT] human gut metagenome; faeces
929
1004
+
Trp
CCA
[ENA]
¢þ
>WENV183426410
OMBL01014534
[OMBL] human gut metagenome; feces
49
124
+
Trp
CCA
[ENA]
¢þ
>WENV183455170
OMDH01004112
[OMDH] human gut metagenome; feces
139
64
-
Trp
CCA
[ENA]
¢þ
>WENV170684409
LFRM01037245
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2498
2573
+
Trp
CCA
[ENA]
¢þ
>WENV170725261
LSQX01336615
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2516
2591
+
Trp
CCA
[ENA]
¢þ
>C181115588
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
886506
886431
-
Trp
CCA
-
¡û
>C191031591
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
851684
851609
-
Trp
CCA
-
¡û
>C191031646
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
886506
886431
-
Trp
CCA
-
¡û
>C191072257
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
886518
886443
-
Trp
CCA
-
¡û
>W10115272
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74683
74758
+
Trp
CCA
[ENA]
¡û
>C11108784
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
886505
886430
-
Trp
CCA
[Ensembl]
¡û
>W11118858
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74683
74758
+
Trp
CCA
[ENA]
¡û
>W1610606809
LFTH01000021
Bacillota
Clostridiales bacterium DTU033 [LFTH]
2498
2573
+
Trp
CCA
[ENA]
¡û
>W1610947632
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
103528
103603
+
Trp
CCA
[ENA]
¡û
>W1710728096
LFTH01000021
Bacillota
Clostridiales bacterium DTU033 [LFTH]
2498
2573
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK