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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348437 (27 seq.)
>A171000105
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1370576
1370648
+
Arg
GCG
-
¡û
>A171000887
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
112922
112998
+
Arg
GCG
-
¡û
>A171002017
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
38477
38548
+
Arg
GCG
-
¡û
>A171007690
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
64845
64917
+
Arg
GCG
-
¡û
>WENV180037496
FVAA011135178
[FVAA] soil metagenome; Soil
140
68
-
Arg
GCG
[ENA]
¢þ
>WENV181229678
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
198109
198038
-
Arg
GCG
[ENA]
¢þ
>WENV181230024
OFEK01000198
[OFEK] activated sludge metagenome; Anaerobic digester
30653
30580
-
Arg
GCG
[ENA]
¢þ
>WENV170021466
BBPF01013060
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4480
4553
+
Arg
GCG
[ENA]
¢þ
>At1668
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1387608
1387679
+
Arg
GCG
[Ensembl]
¡û
>WENV170651586
JRYF01105513
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
62
136
+
Arg
GCG
[ENA]
¢þ
>WENV170662104
JXWV01198970
[JXWV] soil metagenome; rice field; organic FYM Plot
139
67
-
Arg
GCG
[ENA]
¢þ
>WENV170668770
LAHQ01032677
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
142
71
-
Arg
GCG
[ENA]
¢þ
>WENV170669240
LAHR01057083
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
211
282
+
Arg
GCG
[ENA]
¢þ
>WENV170671395
LAHU01046462
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2189
2116
-
Arg
GCG
[ENA]
¢þ
>WENV170675823
LDZQ01000715
[LDZQ] terrestrial metagenome; oil reservoir sample I2
775
847
+
Arg
GCG
[ENA]
¢þ
>WENV170676696
LDZS01001955
[LDZS] terrestrial metagenome; oil reservoir sample K3
142
70
-
Arg
GCG
[ENA]
¢þ
>WENV170683763
LFRM01002916
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
130
202
+
Arg
GCG
[ENA]
¢þ
>WENV170718778
LSQX01090388
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7
79
+
Arg
GCG
[ENA]
¢þ
>WENV170725530
LSQX01346077
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
303
376
+
Arg
GCG
[ENA]
¢þ
>WENV170976092
MTKZ01004503
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
30049
29976
-
Arg
GCG
[ENA]
¢þ
>W1910574941
JQJK01000017
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
75095
75022
-
Arg
GCG
[ENA]
¡û
>W1910574970
JQKN01000014
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
75104
75031
-
Arg
GCG
[ENA]
¡û
>W1910575103
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2414341
2414270
-
Arg
GCG
[ENA]
¡û
>W1910635138
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
220188
220115
-
Arg
GCG
[ENA]
¡û
>W1910655473
LZPM01000052
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
86768
86695
-
Arg
GCG
[ENA]
¡û
>W1911690472
QLOE01000013
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
408
479
+
Arg
GCG
[ENA]
¡û
>W1911722808
QREL01000002
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
213513
213441
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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