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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348441 (18 seq.)
>WENV180230953
OBCM01042728
[OBCM] human gut metagenome; human gut
213
288
+
Gln
TTG
[ENA]
¡û
>WENV180619608
OCQB01006891
[OCQB] human gut metagenome; human gut
2189
2114
-
Gln
TTG
[ENA]
¡û
>WENV181727595
OGQA01001108
[OGQA] human gut metagenome; faeces
133
58
-
Gln
TTG
[ENA]
¡û
>WENV182078500
OHGA01000192
[OHGA] human gut metagenome; feces
135
60
-
Gln
TTG
[ENA]
¡û
>WENV182111580
OHIS01000395
[OHIS] human gut metagenome; feces
1101
1026
-
Gln
TTG
[ENA]
¡û
>WENV182124507
OHJR01000021
[OHJR] human gut metagenome; feces
57895
57970
+
Gln
TTG
[ENA]
¡û
>WENV182176862
OHNJ01000182
[OHNJ] human gut metagenome; feces
135
60
-
Gln
TTG
[ENA]
¡û
>WENV182310946
OHXQ01000008
[OHXQ] human gut metagenome; feces
66302
66227
-
Gln
TTG
[ENA]
¡û
>WENV182347128
OIAW01000007
[OIAW] human gut metagenome; feces
57466
57391
-
Gln
TTG
[ENA]
¡û
>WENV182377783
OIDI01000048
[OIDI] human gut metagenome; feces
7182
7257
+
Gln
TTG
[ENA]
¡û
>WENV182377946
OIDJ01000015
[OIDJ] human gut metagenome; feces
7182
7257
+
Gln
TTG
[ENA]
¡û
>WENV182393286
OIEH01023296
[OIEH] human gut metagenome; human gut
817
892
+
Gln
TTG
[ENA]
¡û
>WENV183037924
OLGB01000020
[OLGB] human gut metagenome; faeces
199651
199576
-
Gln
TTG
[ENA]
¡û
>WENV183040810
OLGD01000164
[OLGD] human gut metagenome; faeces
119501
119426
-
Gln
TTG
[ENA]
¡û
>WENV183453665
OMDE01000409
[OMDE] human gut metagenome; feces
7854
7929
+
Gln
TTG
[ENA]
¡û
>WENV170026434
CDTW01040563
[CDTW] gut metagenome; human stools
73746
73671
-
Gln
TTG
[ENA]
¡û
>WENV170053393
CDZD01024129
[CDZD] gut metagenome; human stools
18438
18513
+
Gln
TTG
[ENA]
¡û
>WENV170055927
CDZF01028200
[CDZF] gut metagenome; human stools
26332
26257
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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