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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348750 (27 seq.)
>W1710864214
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
309750
309825
+
Met
CAT
[ENA]
¡û
>W1710872952
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
36192
36117
-
Met
CAT
[ENA]
¡û
>W131166838
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
316732
316657
-
Met
CAT
[ENA]
¡û
>W141007557
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
1872733
1872658
-
Met
CAT
[ENA]
¡û
>WENV181307987
OFIS01000082
[OFIS] sludge metagenome; sludge
11605
11680
+
Ile2
CAT
[ENA]
¢þ
>WENV181312136
OFJB01047254
[OFJB] sludge metagenome; sludge
757
832
+
Ile2
CAT
[ENA]
¢þ
>WENV181381980
OFRF01043433
[OFRF] wastewater metagenome; Exp Tend CN 50WW
184
259
+
Ile2
CAT
[ENA]
¢þ
>W141188917
AYNA01000128
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
20542
20467
-
Met
CAT
[ENA]
¡û
>C08001594
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
3968812
3968740
-
Met
CAT
[Ensembl]
¡û
>WENV170002381
AGTN01013599
[AGTN] bioreactor metagenome; poplar biomass
128
203
+
Met
CAT
[ENA]
¢þ
>WENV170558715
CXWL01086218
[CXWL] groundwater metagenome; biofilm material
1429
1354
-
Met
CAT
[ENA]
¢þ
>C181227835
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1834448
1834523
+
Met
CAT
-
¡û
>C191152110
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
931928
931853
-
Met
CAT
-
¡û
>W141821209
JQNK01000008
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
509947
509872
-
Met
CAT
[ENA]
¡û
>W1910914017
NHSJ01000118
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
25420
25495
+
Met
CAT
[ENA]
¡û
>W1911148304
NPET01000003
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
94199
94274
+
Met
CAT
[ENA]
¡û
>C09107525
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4455306
4455231
-
Met
CAT
[Ensembl]
¡û
>C09107626
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3955975
3955900
-
Met
CAT
[Ensembl]
¡û
>C09107930
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
358737
358662
-
Met
CAT
[Ensembl]
¡û
>W1911219169
NRSI01000018
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
74196
74121
-
Met
CAT
[ENA]
¡û
>W1810397217
PYDU01000020
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
37835
37760
-
Met
CAT
[ENA]
¡û
>W1810789350
QRGO01000001
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
1878703
1878778
+
Met
CAT
[ENA]
¡û
>W1810884377
QUMO01000004
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
61907
61832
-
Met
CAT
[ENA]
¡û
>W1610726560
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
309750
309825
+
Met
CAT
[ENA]
¡û
>W1610735298
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
36192
36117
-
Met
CAT
[ENA]
¡û
>W1710568245
FOTK01000023
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
16394
16319
-
Met
CAT
[ENA]
¡û
>W1710609856
FYDG01000003
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
17033
16958
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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