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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349283 (22 seq.)
>W1710821329
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
73198
73123
-
Lys
CTT
[ENA]
¡û
>WENV180788603
ODIS01082422
[ODIS] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV180832517
ODKC01002033
[ODKC] human metagenome; G_DNA_Supragingival plaque
3637
3564
-
Lys
CTT
[ENA]
¢þ
>WENV180832749
ODKC01003816
[ODKC] human metagenome; G_DNA_Supragingival plaque
1314
1241
-
Lys
CTT
[ENA]
¢þ
>WENV180834385
ODKD01018047
[ODKD] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV180891885
ODMQ01031205
[ODMQ] human metagenome; G_DNA_Supragingival plaque
180
253
+
Lys
CTT
[ENA]
¢þ
>WENV180943594
ODUC01001102
[ODUC] human metagenome; G_DNA_Supragingival plaque
12282
12355
+
Lys
CTT
[ENA]
¢þ
>WENV180958672
ODUL01019965
[ODUL] human metagenome; G_DNA_Supragingival plaque
289
362
+
Lys
CTT
[ENA]
¢þ
>WENV181007357
ODWE01000034
[ODWE] human metagenome; G_DNA_Supragingival plaque
33115
33042
-
Lys
CTT
[ENA]
¢þ
>WENV181083721
OEAV01019578
[OEAV] human metagenome; G_DNA_Supragingival plaque
1314
1241
-
Lys
CTT
[ENA]
¢þ
>WENV181098130
OECA01092602
[OECA] human metagenome; G_DNA_Tongue dorsum
104
31
-
Lys
CTT
[ENA]
¢þ
>WENV181121384
OEFL01003144
[OEFL] human metagenome; G_DNA_Supragingival plaque
2958
2885
-
Lys
CTT
[ENA]
¢þ
>C191114611
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1787629
1787702
+
Lys
CTT
-
¡û
>C191114684
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
523595
523522
-
Lys
CTT
-
¡û
>C191138589
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
548473
548400
-
Lys
CTT
-
¡û
>C191209749
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
89713
89640
-
Lys
CTT
-
¡û
>C191210899
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
2347967
2347894
-
Lys
CTT
-
¡û
>W1810155051
PJAF01000015
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
48521
48447
-
Lys
CTT
[ENA]
¡û
>C151079785
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
679625
679552
-
Lys
CTT
[Ensembl]
¡û
>C151084395
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
2721001
2721076
+
Lys
CTT
[Ensembl]
¡û
>W1610685291
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
73198
73123
-
Lys
CTT
[ENA]
¡û
>W1710608153
FXAR01000001
Actinomycetota
Corynebacterium pollutisoli [FXAR]
64221
64146
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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