This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349665 (14 seq.)
>C024140
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
49445
49371
-
Gly
CCC
[Ensembl]
¡û
>WENV183513519
OMKS01005648
[OMKS] sediment metagenome; hot spring sediment
8280
8208
-
Gly
CCC
[ENA]
¢þ
>WENV170661117
JXWU01108345
[JXWU] soil metagenome; rice field; organic control Plot
702
630
-
Gly
CCC
[ENA]
¢þ
>C181192129
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
62180
62107
-
Gly
CCC
-
¡û
>C191072393
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
48646
48573
-
Gly
CCC
-
¡û
>C191072439
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
49944
49871
-
Gly
CCC
-
¡û
>C191072483
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
49734
49661
-
Gly
CCC
-
¡û
>C191072528
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
48656
48583
-
Gly
CCC
-
¡û
>C191072572
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
49692
49619
-
Gly
CCC
-
¡û
>W1910870047
NCQX01000032
Rhodothermota
Salinibacter ruber SP273 [NCQX]
13853
13780
-
Gly
CCC
[ENA]
¡û
>W1910870068
NCQY01000001
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
1192
1119
-
Gly
CCC
[ENA]
¡û
>W1910870149
NCQZ01000044
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
32958
33031
+
Gly
CCC
[ENA]
¡û
>W1910870198
NCRA01000036
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
67057
67130
+
Gly
CCC
[ENA]
¡û
>C131018259
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
49719
49645
-
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK