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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349707 (12 seq.)
>W1711466315
MJMG01000001
Alphaproteobacteria
Wolbachia pipientis [MJMG]
217
145
-
Gly
TCC
[ENA]
¡û
>W1712108442
NJBR01000092
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [NJBR]
6488
6560
+
Gly
TCC
[ENA]
¡û
>C026873
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
855130
855059
-
Gly
TCC
[Ensembl]
¡û
>W141001017
ADHD01000046
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [ADHD]
496
424
-
Gly
TCC
[ENA]
¡û
>W141001037
ADHE01000023
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus [ADHE]
2713
2641
-
Gly
TCC
[ENA]
¡û
>WENV181405265
OGCC01011297
[OGCC] insect metagenome; haemolymph
512
584
+
Gly
TCC
[ENA]
¢þ
>WENV181405322
OGCD01000566
[OGCD] insect metagenome; haemolymph
2074
2146
+
Gly
TCC
[ENA]
¢þ
>WENV181406115
OGCF01001771
[OGCF] insect metagenome; haemolymph
1258
1186
-
Gly
TCC
[ENA]
¢þ
>C191123121
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
187657
187585
-
Gly
TCC
-
¡û
>C151001132
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
900622
900694
+
Gly
TCC
[Ensembl]
¡û
>C151101105
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
580532
580460
-
Gly
TCC
-
¡û
>C131019576
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
942562
942490
-
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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