This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349801 (45 seq.)
>C171100650
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
1643378
1643303
-
His
GTG
-
¡û
>C171120252
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
609388
609463
+
His
GTG
-
¡û
>W131222513
AUBI01000004
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
171488
171563
+
His
GTG
[ENA]
¡û
>W131222514
AUBI01000004
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
181286
181361
+
His
GTG
[ENA]
¡û
>W141428623
JEOA01000011
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
68944
69019
+
His
GTG
[ENA]
¡û
>WENV170669498
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
95009
94934
-
His
GTG
[ENA]
¢þ
>C181063347
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
696913
696838
-
His
GTG
-
¡û
>C181088279
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
903451
903526
+
His
GTG
-
¡û
>C181193678
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
661024
660949
-
His
GTG
-
¡û
>C191002674
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
1110771
1110846
+
His
GTG
-
¡û
>C191023987
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
864385
864310
-
His
GTG
-
¡û
>C191150960
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2418886
2418961
+
His
GTG
-
¡û
>W1910181783
BJMI01000010
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
30407
30482
+
His
GTG
[ENA]
¡û
>W1910872385
NDFP01000004
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
47460
47385
-
His
GTG
[ENA]
¡û
>W1910929265
NIRT01000033
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
5328
5253
-
His
GTG
[ENA]
¡û
>W1910990484
NKTY01000010
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
14880
14805
-
His
GTG
[ENA]
¡û
>W1910990590
NKUA01000013
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
93994
94069
+
His
GTG
[ENA]
¡û
>W1910990681
NKUC01000019
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
27273
27348
+
His
GTG
[ENA]
¡û
>W1911717705
QQBI01000026
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
18459
18384
-
His
GTG
[ENA]
¡û
>W1810069697
PEBQ01000093
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
135829
135754
-
His
GTG
[ENA]
¡û
>W1510011596
BBMU01000276
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
138069
137994
-
His
GTG
[ENA]
¡û
>W1511271168
JOKL01000120
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
198470
198545
+
His
GTG
[ENA]
¡û
>W11149337
AEUP01000030
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
376288
376213
-
His
GTG
[ENA]
¡û
>C161105588
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1067683
1067608
-
His
GTG
[Ensembl]
¡û
>W1610040746
BAMV01000011
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
149750
149675
-
His
GTG
[ENA]
¡û
>W1610040829
BAMX01000010
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
93892
93967
+
His
GTG
[ENA]
¡û
>W1610041044
BANC01000046
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
9645
9720
+
His
GTG
[ENA]
¡û
>W1610070880
BCTP01000007
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
86537
86612
+
His
GTG
[ENA]
¡û
>W1610624742
LHZQ01000222
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
188948
188873
-
His
GTG
[ENA]
¡û
>W1610624847
LHZT01000112
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
2353
2278
-
His
GTG
[ENA]
¡û
>W1710037944
BAMV01000011
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
149750
149675
-
His
GTG
[ENA]
¡û
>W1710038027
BAMX01000010
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
93892
93967
+
His
GTG
[ENA]
¡û
>W1710038108
BAMZ01000009
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
158745
158820
+
His
GTG
[ENA]
¡û
>W1710038242
BANC01000046
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
9645
9720
+
His
GTG
[ENA]
¡û
>W1710068202
BCTP01000007
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
86537
86612
+
His
GTG
[ENA]
¡û
>W1710584200
FQVJ01000012
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
70415
70340
-
His
GTG
[ENA]
¡û
>W1710624273
JOMM01000029
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
67216
67291
+
His
GTG
[ENA]
¡û
>W1710624376
JOMP01000007
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
151499
151574
+
His
GTG
[ENA]
¡û
>W1710624417
JOMQ01000007
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
4689
4614
-
His
GTG
[ENA]
¡û
>W1710624470
JOOY01000025
Alphaproteobacteria
Acetobacter orientalis [JOOY]
407
332
-
His
GTG
[ENA]
¡û
>W1710624535
JOPA01000002
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
104432
104357
-
His
GTG
[ENA]
¡û
>W1710624876
JOPJ01000004
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
57129
57204
+
His
GTG
[ENA]
¡û
>W1710624911
JOPK01000004
Alphaproteobacteria
Acetobacter orientalis [JOPK]
140431
140356
-
His
GTG
[ENA]
¡û
>W1710755860
LHZQ01000222
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
188948
188873
-
His
GTG
[ENA]
¡û
>W1710755965
LHZT01000112
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
2353
2278
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK