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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349801 (123 seq.)
>W1711136715
LVAM01000010
Bacillota
Clostridiales bacterium Firm_07 [LVAM]
292210
292135
-
Gly
GCC
[ENA]
¡û
>W1711136718
LVAM01000010
Bacillota
Clostridiales bacterium Firm_07 [LVAM]
127645
127570
-
Gly
GCC
[ENA]
¡û
>W1711409652
MGOY01000018
Bacillota
Clostridiales bacterium GWF2_38_85 [MGOY]
18279
18354
+
Gly
GCC
[ENA]
¡û
>W1711409655
MGOY01000018
Bacillota
Clostridiales bacterium GWF2_38_85 [MGOY]
19005
19080
+
Gly
GCC
[ENA]
¡û
>WENV180217698
OBAR01003515
[OBAR] human gut metagenome; human gut
382
457
+
Gly
GCC
[ENA]
¡û
>WENV180222500
OBBD01016598
[OBBD] human gut metagenome; human gut
331
406
+
Gly
GCC
[ENA]
¡û
>WENV180223979
OBBI01017244
[OBBI] human gut metagenome; human gut
359
434
+
Gly
GCC
[ENA]
¡û
>WENV180224741
OBBK01022430
[OBBK] human gut metagenome; human gut
331
406
+
Gly
GCC
[ENA]
¡û
>WENV180244505
OBDK01108481
[OBDK] human gut metagenome; human gut
107
182
+
Gly
GCC
[ENA]
¡û
>WENV180287080
OBII01096763
[OBII] human gut metagenome; feces
59
134
+
Gly
GCC
[ENA]
¡û
>WENV180324227
OBKR01203611
[OBKR] human gut metagenome; feces
126
201
+
Gly
GCC
[ENA]
¡û
>WENV180336431
OBLG01001637
[OBLG] human gut metagenome; human gut
5737
5662
-
Gly
GCC
[ENA]
¡û
>WENV180529756
OCHK01000236
[OCHK] human gut metagenome; human gut
10998
10923
-
Gly
GCC
[ENA]
¡û
>WENV180537028
OCHN01092749
[OCHN] human gut metagenome; human gut
168
243
+
Gly
GCC
[ENA]
¡û
>WENV180539689
OCHP01078964
[OCHP] human gut metagenome; human gut
286
361
+
Gly
GCC
[ENA]
¡û
>WENV180541497
OCHR01180979
[OCHR] human gut metagenome; human gut
110
35
-
Gly
GCC
[ENA]
¡û
>WENV180548641
OCIX01014845
[OCIX] human gut metagenome; human gut
331
406
+
Gly
GCC
[ENA]
¡û
>WENV180578176
OCMB01021260
[OCMB] human gut metagenome; human gut
193
118
-
Gly
GCC
[ENA]
¡û
>WENV180617488
OCQA01014505
[OCQA] human gut metagenome; human gut
560
635
+
Gly
GCC
[ENA]
¡û
>WENV180623390
OCQE01027529
[OCQE] human gut metagenome; human gut
331
406
+
Gly
GCC
[ENA]
¡û
>WENV180624875
OCQH01232124
[OCQH] human gut metagenome; human gut
137
62
-
Gly
GCC
[ENA]
¡û
>WENV180628221
OCQO01074346
[OCQO] human gut metagenome; human gut
193
118
-
Gly
GCC
[ENA]
¡û
>WENV180648593
OCSJ01051647
[OCSJ] human gut metagenome; human gut
191
116
-
Gly
GCC
[ENA]
¡û
>WENV180649326
OCSK01030416
[OCSK] human gut metagenome; human gut
410
485
+
Gly
GCC
[ENA]
¡û
>WENV180703488
ODEI01000987
[ODEI] human metagenome; G_DNA_Stool
8289
8214
-
Gly
GCC
[ENA]
¡û
>WENV180711258
ODFM01114796
[ODFM] human metagenome; G_DNA_Stool
277
202
-
Gly
GCC
[ENA]
¡û
>WENV180715393
ODFW01007219
[ODFW] human metagenome; G_DNA_Stool
3358
3283
-
Gly
GCC
[ENA]
¡û
>WENV180715394
ODFW01007219
[ODFW] human metagenome; G_DNA_Stool
3113
3038
-
Gly
GCC
[ENA]
¡û
>WENV180762189
ODHZ01072081
[ODHZ] human metagenome; G_DNA_Stool
637
562
-
Gly
GCC
[ENA]
¡û
>WENV180770612
ODIH01000413
[ODIH] human metagenome; G_DNA_Stool
28748
28673
-
Gly
GCC
[ENA]
¡û
>WENV180800195
ODJC01113351
[ODJC] human metagenome; G_DNA_Stool
175
250
+
Gly
GCC
[ENA]
¡û
>WENV180850850
ODKV01013598
[ODKV] human metagenome; G_DNA_Stool
95
170
+
Gly
GCC
[ENA]
¡û
>WENV180850851
ODKV01013598
[ODKV] human metagenome; G_DNA_Stool
340
415
+
Gly
GCC
[ENA]
¡û
>WENV180851720
ODKV01167280
[ODKV] human metagenome; G_DNA_Stool
241
169
-
Gly
GCC
[ENA]
¡û
>WENV180886054
ODME01020733
[ODME] human metagenome; G_DNA_Stool
201
276
+
Gly
GCC
[ENA]
¡û
>WENV180942077
ODTZ01038193
[ODTZ] human metagenome; G_DNA_Stool
298
223
-
Gly
GCC
[ENA]
¡û
>WENV180957611
ODUK01095676
[ODUK] human metagenome; G_DNA_Stool
39
114
+
Gly
GCC
[ENA]
¡û
>WENV180970655
ODUU01005131
[ODUU] human metagenome; G_DNA_Stool
6231
6306
+
Gly
GCC
[ENA]
¡û
>WENV181357650
OFMU01047657
[OFMU] human gut metagenome; human gut
82
157
+
Gly
GCC
[ENA]
¡û
>WENV181437314
OGDF01089122
[OGDF] human gut metagenome; human gut
478
403
-
Gly
GCC
[ENA]
¡û
>WENV181479561
OGFG01003633
[OGFG] metagenome; Human gut stool
920
995
+
Gly
GCC
[ENA]
¡û
>WENV181545174
OGIG01014822
[OGIG] metagenome; Human gut stool
1375
1450
+
Gly
GCC
[ENA]
¡û
>WENV181684445
OGOV01009428
[OGOV] human gut metagenome; faeces
2906
2831
-
Gly
GCC
[ENA]
¡û
>WENV181690828
OGOZ01000678
[OGOZ] human gut metagenome; faeces
14328
14253
-
Gly
GCC
[ENA]
¡û
>WENV181691271
OGOZ01004212
[OGOZ] human gut metagenome; faeces
2223
2148
-
Gly
GCC
[ENA]
¡û
>WENV181740311
OGQJ01004989
[OGQJ] human gut metagenome; faeces
7700
7625
-
Gly
GCC
[ENA]
¡û
>WENV181754054
OGQR01005405
[OGQR] human gut metagenome; faeces
5929
5854
-
Gly
GCC
[ENA]
¡û
>WENV181769647
OGRA01064806
[OGRA] human gut metagenome; faeces
751
676
-
Gly
GCC
[ENA]
¡û
>WENV181772643
OGRD01009742
[OGRD] human gut metagenome; faeces
1050
975
-
Gly
GCC
[ENA]
¡û
>WENV181783724
OGRL01009054
[OGRL] human gut metagenome; faeces
4240
4165
-
Gly
GCC
[ENA]
¡û
>WENV181830472
OGUO01004061
[OGUO] human gut metagenome; faeces
1508
1433
-
Gly
GCC
[ENA]
¡û
>WENV181903493
OGXX01001389
[OGXX] human gut metagenome; faeces
23424
23499
+
Gly
GCC
[ENA]
¡û
>WENV182038213
OHDE01002247
[OHDE] human gut metagenome; feces
2125
2050
-
Gly
GCC
[ENA]
¡û
>WENV182275904
OHUN01021873
[OHUN] human gut metagenome; feces
74
1
-
Gly
GCC
[ENA]
¡û
>WENV182521345
OIWQ01009292
[OIWQ] human gut metagenome; faeces
4800
4875
+
Gly
GCC
[ENA]
¡û
>WENV182524431
OIWT01000203
[OIWT] human gut metagenome; faeces
33719
33794
+
Gly
GCC
[ENA]
¡û
>WENV182525213
OIWT01001511
[OIWT] human gut metagenome; faeces
26947
26872
-
Gly
GCC
[ENA]
¡û
>WENV182527240
OIWU01000110
[OIWU] human gut metagenome; faeces
51512
51437
-
Gly
GCC
[ENA]
¡û
>WENV182536278
OIXH01000369
[OIXH] human gut metagenome; faeces
49960
50035
+
Gly
GCC
[ENA]
¡û
>WENV182620870
OJKI01025190
[OJKI] metagenome; faeces
346
421
+
Gly
GCC
[ENA]
¡û
>WENV182621412
OJKI01101465
[OJKI] metagenome; faeces
329
254
-
Gly
GCC
[ENA]
¡û
>WENV182621413
OJKI01101465
[OJKI] metagenome; faeces
84
9
-
Gly
GCC
[ENA]
¡û
>WENV182634820
OJKY01022234
[OJKY] metagenome; faeces
232
307
+
Gly
GCC
[ENA]
¡û
>WENV182740153
OJQL01003502
[OJQL] human gut metagenome; stool sample
123
198
+
Gly
GCC
[ENA]
¡û
>WENV182748495
OJQW01024484
[OJQW] human gut metagenome; stool sample
381
306
-
Gly
GCC
[ENA]
¡û
>WENV182885986
OKSC01060663
[OKSC] human gut metagenome; faeces
155
230
+
Gly
GCC
[ENA]
¡û
>WENV182888085
OKSD01056571
[OKSD] human gut metagenome; faeces
763
688
-
Gly
GCC
[ENA]
¡û
>WENV182968969
OKXB01008478
[OKXB] human gut metagenome; human gut
318
393
+
Gly
GCC
[ENA]
¡û
>WENV182972374
OKXI01032223
[OKXI] human gut metagenome; human gut
743
818
+
Gly
GCC
[ENA]
¡û
>WENV182972910
OKXI01109555
[OKXI] human gut metagenome; human gut
59
134
+
Gly
GCC
[ENA]
¡û
>WENV183041384
OLGD01000656
[OLGD] human gut metagenome; faeces
5977
5902
-
Gly
GCC
[ENA]
¡û
>WENV183043309
OLGD01040478
[OLGD] human gut metagenome; faeces
641
566
-
Gly
GCC
[ENA]
¡û
>WENV183044251
OLGE01000576
[OLGE] human gut metagenome; faeces
33864
33939
+
Gly
GCC
[ENA]
¡û
>WENV183045715
OLGE01021417
[OLGE] human gut metagenome; faeces
1750
1825
+
Gly
GCC
[ENA]
¡û
>WENV183068306
OLIQ01005104
[OLIQ] metagenome; faeces
3196
3271
+
Gly
GCC
[ENA]
¡û
>WENV183069153
OLIQ01080988
[OLIQ] metagenome; faeces
229
154
-
Gly
GCC
[ENA]
¡û
>WENV183072867
OLIT01007409
[OLIT] human gut metagenome; feces
4338
4263
-
Gly
GCC
[ENA]
¡û
>WENV183076330
OLIW01002776
[OLIW] human gut metagenome; feces
9463
9538
+
Gly
GCC
[ENA]
¡û
>WENV183128882
OLNZ01026802
[OLNZ] human gut metagenome; faeces
1619
1694
+
Gly
GCC
[ENA]
¡û
>WENV183130066
OLOA01000684
[OLOA] human gut metagenome; faeces
28493
28568
+
Gly
GCC
[ENA]
¡û
>WENV183153207
OLOQ01055074
[OLOQ] human gut metagenome; faeces
718
643
-
Gly
GCC
[ENA]
¡û
>WENV183158986
OLOU01000523
[OLOU] human gut metagenome; faeces
4830
4755
-
Gly
GCC
[ENA]
¡û
>WENV183161936
OLOV01030915
[OLOV] human gut metagenome; faeces
1314
1239
-
Gly
GCC
[ENA]
¡û
>WENV183163692
OLOW01022394
[OLOW] human gut metagenome; faeces
155
230
+
Gly
GCC
[ENA]
¡û
>WENV183190515
OLPR01000557
[OLPR] human gut metagenome; faeces
107
182
+
Gly
GCC
[ENA]
¡û
>WENV183192006
OLPR01066942
[OLPR] human gut metagenome; faeces
272
197
-
Gly
GCC
[ENA]
¡û
>WENV183281176
OLSB01042125
[OLSB] human gut metagenome; faeces
1147
1072
-
Gly
GCC
[ENA]
¡û
>WENV183330658
OLWB01016115
[OLWB] human gut metagenome; faeces
769
694
-
Gly
GCC
[ENA]
¡û
>WENV183334061
OLWE01049600
[OLWE] human gut metagenome; feces
217
292
+
Gly
GCC
[ENA]
¡û
>WENV183335612
OLWG01014980
[OLWG] human gut metagenome; feces
1220
1145
-
Gly
GCC
[ENA]
¡û
>WENV183336514
OLWH01012494
[OLWH] human gut metagenome; feces
727
802
+
Gly
GCC
[ENA]
¡û
>WENV183359014
OLXH01004128
[OLXH] human gut metagenome; feces
630
555
-
Gly
GCC
[ENA]
¡û
>WENV183362629
OLXK01015497
[OLXK] human gut metagenome; feces
34
109
+
Gly
GCC
[ENA]
¡û
>WENV183381600
OLYJ01019963
[OLYJ] human gut metagenome; feces
157
232
+
Gly
GCC
[ENA]
¡û
>WENV183405703
OLZZ01043105
[OLZZ] human gut metagenome; feces
562
487
-
Gly
GCC
[ENA]
¡û
>WENV183444399
OMCO01004041
[OMCO] human gut metagenome; feces
174
249
+
Gly
GCC
[ENA]
¡û
>WENV183445410
OMCP01016608
[OMCP] human gut metagenome; feces
623
548
-
Gly
GCC
[ENA]
¡û
>WENV183466875
OMEC01015838
[OMEC] human gut metagenome; feces
169
94
-
Gly
GCC
[ENA]
¡û
>WENV183470726
OMEK01002933
[OMEK] human gut metagenome; feces
3633
3558
-
Gly
GCC
[ENA]
¡û
>WENV183574810
OOCI01000026
[OOCI] human gut metagenome; human gut
116543
116618
+
Gly
GCC
[ENA]
¡û
>WENV183600893
OODJ01000041
[OODJ] human gut metagenome; human gut
73854
73929
+
Gly
GCC
[ENA]
¡û
>WENV183634452
OOIG01028469
[OOIG] human gut metagenome; human gut
81
156
+
Gly
GCC
[ENA]
¡û
>WENV183648996
OQVS01074943
[OQVS] human gut metagenome; human gut
12
87
+
Gly
GCC
[ENA]
¡û
>WENV183660064
OQWM01111674
[OQWM] human gut metagenome; human gut
58
133
+
Gly
GCC
[ENA]
¡û
>WENV183779798
PPYF01153631
[PPYF] human gut metagenome; stool from patient with Crohn's disease
328
403
+
Gly
GCC
[ENA]
¡û
>WENV170038648
CDYR01016404
[CDYR] gut metagenome; human stools
121
196
+
Gly
GCC
[ENA]
¡û
>WENV170049498
CDZA01066236
[CDZA] gut metagenome; human stools
241
316
+
Gly
GCC
[ENA]
¡û
>WENV170051025
CDZB01052234
[CDZB] gut metagenome; human stools
50864
50939
+
Gly
GCC
[ENA]
¡û
>WENV170051268
CDZB01062102
[CDZB] gut metagenome; human stools
2669
2744
+
Gly
GCC
[ENA]
¡û
>WENV170056412
CDZG01000489
[CDZG] gut metagenome; human stools
12935
13010
+
Gly
GCC
[ENA]
¡û
>WENV170059044
CDZH01031546
[CDZH] gut metagenome; human stools
122
197
+
Gly
GCC
[ENA]
¡û
>WENV170108779
CECA01045714
[CECA] gut metagenome; human stools
219
144
-
Gly
GCC
[ENA]
¡û
>WENV170563577
CZCB01021755
[CZCB] anaerobic digester metagenome; anaerobic digester
638
713
+
Gly
GCC
[ENA]
¡û
>WENV170687218
LFRM01183351
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2370
2295
-
Gly
GCC
[ENA]
¡û
>WENV170687327
LFRM01188770
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
15750
15822
+
Gly
GCC
[ENA]
¡û
>WENV170689844
LFRM01314022
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2212
2287
+
Gly
GCC
[ENA]
¡û
>WENV170690426
LFRM01340972
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
167
242
+
Gly
GCC
[ENA]
¡û
>WENV170717567
LSQX01040782
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8332
8257
-
Gly
GCC
[ENA]
¡û
>WENV170778512
LXOW01411717
[LXOW] bovine gut metagenome; Cow rumen
13242
13167
-
Gly
GCC
[ENA]
¡û
>WENV170969885
MTKW01042918
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2462
2387
-
Gly
GCC
[ENA]
¡û
>W2110102619
CAJFRY010000026
Bacillota
Candidatus Woodwardibium gallinarum [CAJFRY]
416
341
-
Gly
GCC
[ENA]
¡û
>W1610947835
LVAM01000010
Bacillota
Clostridiales bacterium Firm_07 [LVAM]
292210
292135
-
Gly
GCC
[ENA]
¡û
>W1610947838
LVAM01000010
Bacillota
Clostridiales bacterium Firm_07 [LVAM]
127645
127570
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK