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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349979 (7 seq.)
>WENV183668659
ORJL010763294
[ORJL] groundwater metagenome; groundwater
59000
58928
-
Thr
TGT
[ENA]
¢þ
>W1910717903
MFZH01000045
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_24 [MFZH]
2935
3009
+
Thr
TGT
[ENA]
¡û
>W1910718222
MFZQ01000019
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_40_13b [MFZQ]
22128
22054
-
Thr
TGT
[ENA]
¡û
>W1910719042
MGAP01000039
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_40_32 [MGAP]
19045
18971
-
Thr
TGT
[ENA]
¡û
>W1910719355
MGAZ01000047
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_39_8 [MGAZ]
3212
3286
+
Thr
TGT
[ENA]
¡û
>W1910721967
MGGE01000055
Unclassified
Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_38_9 [MGGE]
4303
4231
-
Thr
TGT
[ENA]
¡û
>W1910722808
MGHC01000017
Unclassified
Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_39_10 [MGHC]
17385
17313
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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