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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350432 (40 seq.)
>W1711434589
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
714439
714513
+
His
GTG
[ENA]
¡û
>C171057393
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
1177625
1177699
+
His
GTG
-
¡û
>C171057394
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
1177768
1177842
+
His
GTG
-
¡û
>W131095840
AOPO01000002
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
540664
540738
+
His
GTG
[ENA]
¡û
>WENV182568584
OJEV01010024
[OJEV] seawater metagenome; Sea water
104
30
-
His
GTG
[ENA]
¢þ
>WENV182572675
OJFM01001222
[OJFM] seawater metagenome; Sea water
4170
4244
+
His
GTG
[ENA]
¢þ
>WENV182585298
OJHH01006744
[OJHH] seawater metagenome; Sea water
1050
976
-
His
GTG
[ENA]
¢þ
>WENV182588622
OJHV01003428
[OJHV] seawater metagenome; Sea water
147
73
-
His
GTG
[ENA]
¢þ
>WENV182591140
OJIL01000021
[OJIL] seawater metagenome; Sea water
154
80
-
His
GTG
[ENA]
¢þ
>WENV182593251
OJIT01013409
[OJIT] seawater metagenome; Sea water
398
324
-
His
GTG
[ENA]
¢þ
>W141275874
JADJ01000001
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
237080
237006
-
His
GTG
[ENA]
¡û
>WENV170014257
AXCI01003332
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
11221
11295
+
His
GTG
[ENA]
¢þ
>WENV170014290
AXCI01004520
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
3699
3773
+
His
GTG
[ENA]
¢þ
>WENV170014291
AXCI01004520
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
3810
3884
+
His
GTG
[ENA]
¢þ
>WENV170112410
CEGE01005781
[CEGE] microbial mat metagenome; grass silage
77
3
-
His
GTG
[ENA]
¢þ
>WENV170112540
CEGF01002690
[CEGF] microbial mat metagenome; grass silage
2172
2098
-
His
GTG
[ENA]
¢þ
>WENV170672254
LAZR01000037
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
127301
127375
+
His
GTG
[ENA]
¢þ
>WENV170675586
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
65928
65854
-
His
GTG
[ENA]
¢þ
>WENV170692507
LGOV01010986
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
83047
82973
-
His
GTG
[ENA]
¢þ
>WENV170695995
LGVE01194949
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1690
1764
+
His
GTG
[ENA]
¢þ
>WENV170699922
LGVF01680600
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1530
1604
+
His
GTG
[ENA]
¢þ
>WENV170922126
MDTG01025892
[MDTG] marine metagenome; seawater
9469
9395
-
His
GTG
[ENA]
¢þ
>C191007772
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
2525798
2525724
-
His
GTG
-
¡û
>C191165485
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
4428829
4428755
-
His
GTG
-
¡û
>W141564638
JIAY01000002
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
723896
723970
+
His
GTG
[ENA]
¡û
>W141754443
JNVS01000014
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
109211
109137
-
His
GTG
[ENA]
¡û
>W1910006962
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
22847
22773
-
His
GTG
[ENA]
¡û
>W1911148552
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241419
241493
+
His
GTG
[ENA]
¡û
>W1911203565
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
2461082
2461008
-
His
GTG
[ENA]
¡û
>W1810156506
PJBI01000054
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
236265
236191
-
His
GTG
[ENA]
¡û
>W1810157218
PJBT01000185
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
163777
163851
+
His
GTG
[ENA]
¡û
>W1810722033
QNTU01000001
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
139356
139282
-
His
GTG
[ENA]
¡û
>C151075884
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
2432820
2432746
-
His
GTG
[Ensembl]
¡û
>W11180596
AGIB01000045
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
141447
141373
-
His
GTG
[ENA]
¡û
>W121023749
AHBC01000002
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
152702
152776
+
His
GTG
[ENA]
¡û
>W121016479
AGQZ01000065
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
49446
49520
+
His
GTG
[ENA]
¡û
>W1610612218
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
65928
65854
-
His
GTG
[ENA]
¡û
>W1710518732
FNEF01000007
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
167959
168033
+
His
GTG
[ENA]
¡û
>W1710628368
JPUA01000037
Gammaproteobacteria
Halomonas campaniensis [JPUA]
133644
133570
-
His
GTG
[ENA]
¡û
>W1710733724
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
65928
65854
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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