This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350498 (43 seq.)
>W1710953043
LOWE01000011
Betaproteobacteria
Burkholderia mayonis BDU8 [LOWE]
200957
200883
-
Arg
CCT
[ENA]
¡û
>W1711385000
MEDQ01000026
Betaproteobacteria
Bordetella sp. SCN 67-23 [MEDQ]
23042
22968
-
Arg
CCT
[ENA]
¡û
>W1711504503
MKUP01000028
Betaproteobacteria
Burkholderiales bacterium 67-32 [MKUP]
178140
178214
+
Arg
CCT
[ENA]
¡û
>W1711603095
MOLP01000003
Betaproteobacteria
Ralstonia solanacearum [MOLP]
1249
1175
-
Arg
CCT
[ENA]
¡û
>W1712102772
NINX01000011
Betaproteobacteria
Pigmentiphaga sp. NML030171 [NINX]
34344
34270
-
Arg
CCT
[ENA]
¡û
>W131171410
ARGE01000035
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
2479
2405
-
Arg
CCT
[ENA]
¡û
>C001909
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
962825
962899
+
Arg
CCT
[Ensembl]
¡û
>WENV181226948
OFDN01000532
[OFDN] hot springs metagenome; Water
23304
23378
+
Arg
CCT
[ENA]
¢þ
>WENV170686886
LFRM01168648
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1404
1478
+
Arg
CCT
[ENA]
¢þ
>WENV170691655
LFRM01408691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4290
4216
-
Arg
CCT
[ENA]
¢þ
>WENV170725780
LSQX01356203
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2029
1955
-
Arg
CCT
[ENA]
¢þ
>C181013282
CP013389
Betaproteobacteria
Burkholderia mayonis BDU8 [CP013388, CP013389]
3438260
3438186
-
Arg
CCT
-
¡û
>C181158439
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
3383435
3383361
-
Arg
CCT
-
¡û
>C191035853
CP025521
Betaproteobacteria
Bordetella avium Owl19 [CP025521]
910608
910682
+
Arg
CCT
-
¡û
>C191035913
CP025522
Betaproteobacteria
Bordetella avium JBBA [CP025522]
916233
916307
+
Arg
CCT
-
¡û
>C191116961
CP033966
Betaproteobacteria
Pigmentiphaga sp. H8 [CP033966]
4235439
4235365
-
Arg
CCT
-
¡û
>C191171924
CP039731
Betaproteobacteria
Aquitalea aquatilis THG-DN7.12 [CP039731]
652068
651994
-
Arg
CCT
-
¡û
>W141561755
JHYS01000005
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
40154
40080
-
Arg
CCT
[ENA]
¡û
>W1911746143
QVSL01000003
Betaproteobacteria
Bordetella avium BA1 [QVSL]
40974
40900
-
Arg
CCT
[ENA]
¡û
>W1911746213
QVSM01000010
Betaproteobacteria
Bordetella avium BA19 [QVSM]
57023
57097
+
Arg
CCT
[ENA]
¡û
>W1911746267
QVSN01000009
Betaproteobacteria
Bordetella avium BA18 [QVSN]
57023
57097
+
Arg
CCT
[ENA]
¡û
>W1911746325
QVSO01000009
Betaproteobacteria
Bordetella avium BA17 [QVSO]
40974
40900
-
Arg
CCT
[ENA]
¡û
>W1911746382
QVSP01000011
Betaproteobacteria
Bordetella avium BA16 [QVSP]
40974
40900
-
Arg
CCT
[ENA]
¡û
>W1911746436
QVSQ01000010
Betaproteobacteria
Bordetella avium BA15 [QVSQ]
56504
56578
+
Arg
CCT
[ENA]
¡û
>W1911746500
QVSR01000013
Betaproteobacteria
Bordetella avium BA14 [QVSR]
56504
56578
+
Arg
CCT
[ENA]
¡û
>W1911746556
QVSS01000012
Betaproteobacteria
Bordetella avium BA13 [QVSS]
56505
56579
+
Arg
CCT
[ENA]
¡û
>W1911746602
QVST01000011
Betaproteobacteria
Bordetella avium BA12 [QVST]
56481
56555
+
Arg
CCT
[ENA]
¡û
>W1911746666
QVSU01000012
Betaproteobacteria
Bordetella avium BA11 [QVSU]
56505
56579
+
Arg
CCT
[ENA]
¡û
>W1911746721
QVSV01000011
Betaproteobacteria
Bordetella avium BA10 [QVSV]
56503
56577
+
Arg
CCT
[ENA]
¡û
>W1911746776
QVSW01000011
Betaproteobacteria
Bordetella avium ATCC 35086 [QVSW]
56505
56579
+
Arg
CCT
[ENA]
¡û
>W1911746822
QVSX01000010
Betaproteobacteria
Bordetella avium BA8 [QVSX]
40993
40919
-
Arg
CCT
[ENA]
¡û
>W1911746863
QVSY01000002
Betaproteobacteria
Bordetella avium BA6 [QVSY]
85508
85582
+
Arg
CCT
[ENA]
¡û
>W1911746949
QVSZ01000012
Betaproteobacteria
Bordetella avium BA5 [QVSZ]
56505
56579
+
Arg
CCT
[ENA]
¡û
>W1911747001
QVTA01000009
Betaproteobacteria
Bordetella avium BA4 [QVTA]
40974
40900
-
Arg
CCT
[ENA]
¡û
>W1911747062
QVTB01000009
Betaproteobacteria
Bordetella avium BA3 [QVTB]
56505
56579
+
Arg
CCT
[ENA]
¡û
>W1810172818
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
5858629
5858555
-
Arg
CCT
[ENA]
¡û
>W1810659755
QJKI01000008
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
93888
93962
+
Arg
CCT
[ENA]
¡û
>W1810692867
QLKW01000012
Betaproteobacteria
Bordetella avium HAMBI_2160 [QLKW]
56433
56507
+
Arg
CCT
[ENA]
¡û
>W10119610
ADWA01000015
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
53220
53146
-
Arg
CCT
[ENA]
¡û
>C11100598
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
3736218
3736144
-
Arg
CCT
[Ensembl]
¡û
>W11125876
ADWA01000015
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
53220
53146
-
Arg
CCT
[ENA]
¡û
>W1511484067
JWMK01000010
Betaproteobacteria
Bordetella avium Nh1210 [JWMK]
37984
37910
-
Arg
CCT
[ENA]
¡û
>W1610809153
LOWE01000011
Betaproteobacteria
Burkholderia mayonis BDU8 [LOWE]
200957
200883
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK