This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350556 (30 seq.)
>W1711294790
MABH01000233
Alphaproteobacteria
Cereibacter johrii [MABH]
10112
10040
-
Thr
TGT
[ENA]
¡û
>C171036991
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
1807675
1807747
+
Thr
TGT
-
¡û
>W131058647
ANFS01000016
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
44899
44827
-
Thr
TGT
[ENA]
¡û
>C019216
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
1807746
1807817
+
Thr
TGT
[Ensembl]
¡û
>C019307
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1827841
1827912
+
Thr
TGT
[Ensembl]
¡û
>WENV180231728
OBCO01000001
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
128815
128887
+
Thr
TGT
[ENA]
¢þ
>WENV180232702
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
370931
371003
+
Thr
TGT
[ENA]
¢þ
>w001243
AAAE01000102
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
22706
22780
+
Thr
TGT
[ENA]
¡û
>WENV180569567
OCLR01000183
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
91602
91674
+
Thr
TGT
[ENA]
¢þ
>WENV180570548
OCLS01000236
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
11680
11608
-
Thr
TGT
[ENA]
¢þ
>WENV180571085
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
128704
128776
+
Thr
TGT
[ENA]
¢þ
>WENV180573366
OCLW01000006
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
368502
368430
-
Thr
TGT
[ENA]
¢þ
>WENV180639411
OCRL01000002
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
128704
128776
+
Thr
TGT
[ENA]
¢þ
>WENV180640314
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
370931
371003
+
Thr
TGT
[ENA]
¢þ
>C181017222
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
1807664
1807736
+
Thr
TGT
-
¡û
>W09104786
AAMF01000008
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
58375
58447
+
Thr
TGT
[ENA]
¡û
>C181191107
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
1807685
1807757
+
Thr
TGT
-
¡û
>C191151026
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
1226500
1226428
-
Thr
TGT
-
¡û
>W1910548855
FZOV01000001
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
48243
48171
-
Thr
TGT
[ENA]
¡û
>C09109047
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
1447480
1447552
+
Thr
TGT
[Ensembl]
¡û
>W1911749439
QWGP01000005
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
99256
99328
+
Thr
TGT
[ENA]
¡û
>W1911766289
QXDK01000018
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
38948
39020
+
Thr
TGT
[ENA]
¡û
>W1810116255
PHOB01000009
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
34641
34713
+
Thr
TGT
[ENA]
¡û
>W1810463817
PZZW01000002
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
454252
454324
+
Thr
TGT
[ENA]
¡û
>W1810699111
QMCC01000008
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
533872
533944
+
Thr
TGT
[ENA]
¡û
>W1810785192
QRBG01000025
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
358137
358209
+
Thr
TGT
[ENA]
¡û
>W11160165
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1204137
1204209
+
Thr
TGT
[ENA]
¡û
>C161048351
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
1807671
1807743
+
Thr
TGT
-
¡û
>W121076785
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
2829616
2829688
+
Thr
TGT
[ENA]
¡û
>W121102122
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
1807680
1807752
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK