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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350559 (38 seq.)
>W1710860816
LMDE01000010
Actinomycetota
Nocardioides sp. Root122 [LMDE]
17269
17343
+
Val
TAC
[ENA]
¡û
>W1710863718
LMFI01000014
Actinomycetota
Nocardioides sp. Root140 [LMFI]
164370
164296
-
Val
TAC
[ENA]
¡û
>W1710864912
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1294040
1293964
-
Val
TAC
[ENA]
¡û
>W1710880643
LMSM01000003
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
17265
17191
-
Val
TAC
[ENA]
¡û
>W1710880689
LMSN01000003
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
16729
16803
+
Val
TAC
[ENA]
¡û
>W1710880910
LMSQ01000021
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
52221
52295
+
Val
TAC
[ENA]
¡û
>W1710881093
LMSU01000008
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
16797
16871
+
Val
TAC
[ENA]
¡û
>W131190785
ASEP01000039
Actinomycetota
Nocardioides sp. CF8 [ASEP]
17829
17903
+
Val
TAC
[ENA]
¡û
>WENV180000057
CZKB01000003
[CZKB] metagenome; liquid mineral medium
17272
17345
+
Val
TAC
[ENA]
¢þ
>WENV180693438
OCZS011241490
[OCZS] soil metagenome; soil
28
102
+
Val
TAC
[ENA]
¢þ
>C181119585
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
2404373
2404300
-
Val
TAC
-
¡û
>C191158875
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
912167
912094
-
Val
TAC
-
¡û
>C191159459
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
3119145
3119218
+
Val
TAC
-
¡û
>C191159934
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2310595
2310521
-
Val
TAC
-
¡û
>C191182496
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2265685
2265612
-
Val
TAC
-
¡û
>W1810157301
PJBV01000016
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
210488
210415
-
Val
TAC
[ENA]
¡û
>W1810201574
POAG01000017
Actinomycetota
Nocardioides sp. 616 [POAG]
15508
15581
+
Val
TAC
[ENA]
¡û
>W1810427534
PYXZ01000013
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
17290
17363
+
Val
TAC
[ENA]
¡û
>W1810462635
PZYX01000010
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
17914
17987
+
Val
TAC
[ENA]
¡û
>W1810462676
PZYY01000006
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
16650
16724
+
Val
TAC
[ENA]
¡û
>W1810462719
PZYZ01000003
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
358607
358533
-
Val
TAC
[ENA]
¡û
>W1810539909
QDGZ01000006
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
16089
16163
+
Val
TAC
[ENA]
¡û
>W1810626220
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
21312
21385
+
Val
TAC
[ENA]
¡û
>W1810756452
QPFD01000004
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
15553
15626
+
Val
TAC
[ENA]
¡û
>W1510060515
CCXJ01000348
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
8631
8705
+
Val
TAC
[ENA]
¡û
>W1610050513
BBFY01000091
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
452
378
-
Val
TAC
[ENA]
¡û
>W1610068481
BCRJ01000038
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
11189
11115
-
Val
TAC
[ENA]
¡û
>W1610723162
LMDE01000010
Actinomycetota
Nocardioides sp. Root122 [LMDE]
17269
17343
+
Val
TAC
[ENA]
¡û
>W1610726064
LMFI01000014
Actinomycetota
Nocardioides sp. Root140 [LMFI]
164370
164296
-
Val
TAC
[ENA]
¡û
>W1610727258
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1294040
1293964
-
Val
TAC
[ENA]
¡û
>W1610742989
LMSM01000003
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
17265
17191
-
Val
TAC
[ENA]
¡û
>W1610743035
LMSN01000003
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
16729
16803
+
Val
TAC
[ENA]
¡û
>W1610743256
LMSQ01000021
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
52221
52295
+
Val
TAC
[ENA]
¡û
>W1610743439
LMSU01000008
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
16797
16871
+
Val
TAC
[ENA]
¡û
>W1710046912
BBFY01000091
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
452
378
-
Val
TAC
[ENA]
¡û
>W1710065854
BCRJ01000038
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
11189
11115
-
Val
TAC
[ENA]
¡û
>W1710534287
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
3182786
3182860
+
Val
TAC
[ENA]
¡û
>W1710556303
FOKC01000009
Actinomycetota
Nocardioides alpinus [FOKC]
15797
15871
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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