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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350583 (76 seq.)
>W1710785106
LJHO01000010
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
66361
66436
+
Val
TAC
[ENA]
¡û
>W1710856864
LLZR01000020
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
120060
119985
-
Val
TAC
[ENA]
¡û
>W131060601
ANHY01000007
Alphaproteobacteria
Caenispirillum salinarum AK4 [ANHY]
194326
194251
-
Val
TAC
[ENA]
¡û
>W1711073921
LSJB01000101
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1711074657
LSJS01000268
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1711262675
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
261923
261998
+
Val
TAC
[ENA]
¡û
>W131104491
APCQ01000787
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
4919
4844
-
Val
TAC
[ENA]
¡û
>w015403
AAPC01000004
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
276402
276479
+
Val
TAC
[ENA]
¡û
>WENV180016936
FSWC01000084
[FSWC] metagenome; soil
325
400
+
Val
TAC
[ENA]
¢þ
>WENV180099450
NMRC01005078
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
29
104
+
Val
TAC
[ENA]
¢þ
>WENV180366475
OBOD01024892
[OBOD] marine metagenome; ENVO:00002010
156
231
+
Val
TAC
[ENA]
¢þ
>WENV181234041
OFET01001111
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
982
907
-
Val
TAC
[ENA]
¢þ
>WENV181307975
OFIS01000069
[OFIS] sludge metagenome; sludge
92442
92517
+
Val
TAC
[ENA]
¢þ
>WENV181308326
OFIS01004106
[OFIS] sludge metagenome; sludge
825
750
-
Val
TAC
[ENA]
¢þ
>WENV181308388
OFIS01010489
[OFIS] sludge metagenome; sludge
1298
1373
+
Val
TAC
[ENA]
¢þ
>WENV181312429
OFJB01115362
[OFJB] sludge metagenome; sludge
108
183
+
Val
TAC
[ENA]
¢þ
>W141151382
AXBA01000016
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
84402
84327
-
Val
TAC
[ENA]
¡û
>C08011447
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4021550
4021625
+
Val
TAC
[Ensembl]
¡û
>W141241831
CAHP01000053
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
28170
28095
-
Val
TAC
[ENA]
¡û
>WENV182553795
OJCR01033029
[OJCR] seawater metagenome; Sea water
19
94
+
Val
TAC
[ENA]
¢þ
>WENV183729353
PJTQ01026412
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
722
649
-
Val
TAC
[ENA]
¢þ
>WENV183731140
PJTS01012677
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
649
724
+
Val
TAC
[ENA]
¢þ
>WENV183748644
PPFU01063469
[PPFU] hypolithon metagenome; Antarctic Hypolithon
262
187
-
Val
TAC
[ENA]
¢þ
>WENV170003047
AGTN01210038
[AGTN] bioreactor metagenome; poplar biomass
432
357
-
Val
TAC
[ENA]
¢þ
>WENV170003434
AGTN01331980
[AGTN] bioreactor metagenome; poplar biomass
275
200
-
Val
TAC
[ENA]
¢þ
>WENV170003965
AGTN01517635
[AGTN] bioreactor metagenome; poplar biomass
266
191
-
Val
TAC
[ENA]
¢þ
>WENV170328500
CESV01019783
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
109
-
Val
TAC
[ENA]
¢þ
>WENV170455641
CEVA01128422
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
158
233
+
Val
TAC
[ENA]
¢þ
>WENV170668278
LADL02002386
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3676
3601
-
Val
TAC
[ENA]
¢þ
>W09100316
AAAV03000003
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
69352
69427
+
Val
TAC
[ENA]
¡û
>WENV170812128
MDSW01178149
[MDSW] marine metagenome; seawater
33523
33598
+
Val
TAC
[ENA]
¢þ
>WENV170892881
MDTD01044195
[MDTD] marine metagenome; seawater
71397
71472
+
Val
TAC
[ENA]
¢þ
>WENV170916298
MDTE01176257
[MDTE] marine metagenome; seawater
38021
37946
-
Val
TAC
[ENA]
¢þ
>WENV021551
AACY020579530
Marine microbial communities from Global Ocean Sampling (GOS)
157
82
-
Val
TAC
[ENA]
>C181179102
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1951184
1951259
+
Val
TAC
-
¡û
>C191170956
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
1601243
1601318
+
Val
TAC
-
¡û
>C191220347
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2210693
2210618
-
Val
TAC
-
¡û
>C191221050
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
111809
111884
+
Val
TAC
-
¡û
>W141805300
JPKG01000034
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
178442
178517
+
Val
TAC
[ENA]
¡û
>W1910822136
MWMO01000001
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
637441
637516
+
Val
TAC
[ENA]
¡û
>W1911719181
QQWY01000036
Alphaproteobacteria
Sphingomonas sp. ABOLE ABOLE S-NIH.Pt18_1212 [QQWY]
31276
31351
+
Val
TAC
[ENA]
¡û
>W1810158036
PJCH01000001
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
159295
159220
-
Val
TAC
[ENA]
¡û
>W1810463752
PZZU01000024
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810514319
QBUI01000024
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810576586
QENQ01000001
Alphaproteobacteria
Sphingomonas pokkalii L3B27 [QENQ]
1370213
1370288
+
Val
TAC
[ENA]
¡û
>W1810594377
QFZL01000004
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
138996
139071
+
Val
TAC
[ENA]
¡û
>W1810597592
QGHL01000004
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
136729
136804
+
Val
TAC
[ENA]
¡û
>W1810676904
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
79488
79413
-
Val
TAC
[ENA]
¡û
>W1810763433
QQBB01000008
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
12831
12906
+
Val
TAC
[ENA]
¡û
>W1810783295
QQTO01000007
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
121061
121136
+
Val
TAC
[ENA]
¡û
>W1810887321
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
575434
575509
+
Val
TAC
[ENA]
¡û
>C151073209
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
3841529
3841454
-
Val
TAC
[Ensembl]
¡û
>C151082931
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1344468
1344393
-
Val
TAC
-
¡û
>C151098160
FO538765
Alphaproteobacteria
Magnetospira sp. QH-2 [FO538765]
2011882
2011807
-
Val
TAC
[Ensembl]
¡û
>W10110080
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
45451
45526
+
Val
TAC
[ENA]
¡û
>W11112517
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
45451
45526
+
Val
TAC
[ENA]
¡û
>W1511590525
LBHB01000001
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
111768
111693
-
Val
TAC
[ENA]
¡û
>W11151091
AEWJ01000064
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
2602
2527
-
Val
TAC
[ENA]
¡û
>C161040215
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
1870742
1870667
-
Val
TAC
-
¡û
>C161105254
HG966617
Alphaproteobacteria
Candidatus Phaeomarinobacter ectocarpi Ec32 [HG966617]
1217476
1217551
+
Val
TAC
[Ensembl]
¡û
>W1610516213
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1577193
1577118
-
Val
TAC
[ENA]
¡û
>W1610550630
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
715327
715252
-
Val
TAC
[ENA]
¡û
>W1610590475
LDRM01000009
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
14650
14575
-
Val
TAC
[ENA]
¡û
>W1610648912
LJHO01000010
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
66361
66436
+
Val
TAC
[ENA]
¡û
>W1610719245
LLZR01000020
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
120060
119985
-
Val
TAC
[ENA]
¡û
>W1610913226
LSJB01000101
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1610913962
LSJS01000268
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1611024542
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
261923
261998
+
Val
TAC
[ENA]
¡û
>W1710068318
BCTR01000060
Alphaproteobacteria
Sphingomonas azotifigens NBRC 15497 [BCTR]
22229
22154
-
Val
TAC
[ENA]
¡û
>W1710501504
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1577193
1577118
-
Val
TAC
[ENA]
¡û
>W1710508004
FMVR01000010
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
69027
69102
+
Val
TAC
[ENA]
¡û
>W1710538935
FNUY01000002
Alphaproteobacteria
Bosea lathyri [FNUY]
532322
532397
+
Val
TAC
[ENA]
¡û
>W1710548826
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
188089
188164
+
Val
TAC
[ENA]
¡û
>W1710566294
FORV01000006
Alphaproteobacteria
Sphingomonas sp. NFR04 [FORV]
23272
23347
+
Val
TAC
[ENA]
¡û
>W1710660465
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
715327
715252
-
Val
TAC
[ENA]
¡û
>W1710709755
LDRM01000009
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
14650
14575
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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