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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350659 (35 seq.)
>W1711167081
LVWA01000005
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
1005454
1005380
-
Glu
TTC
[ENA]
¡û
>W1711167082
LVWA01000005
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
970063
969991
-
Glu
TTC
[ENA]
¡û
>W1711167101
LVWA01000012
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
175579
175653
+
Glu
TTC
[ENA]
¡û
>W131225603
AUDS01000006
Bacteroidota
Terrimonas ferruginea DSM 30193 [AUDS]
19483
19555
+
Glu
TTC
[ENA]
¡û
>W131236155
AUMD01000017
Bacteroidota
Eisenibacter elegans DSM 3317 [AUMD]
58322
58394
+
Glu
TTC
[ENA]
¡û
>W1711386336
MEFE01000118
Bacteroidota
Sphingobacteriales bacterium SCN 48-20 [MEFE]
14409
14481
+
Glu
TTC
[ENA]
¡û
>W1711503884
MKUA01000019
Bacteroidota
Sphingobacteriales bacterium 48-107 [MKUA]
18048
18120
+
Glu
TTC
[ENA]
¡û
>WENV180014026
FPIC01031883
[FPIC] soil metagenome; Soil
87
13
-
Glu
TTC
[ENA]
¢þ
>WENV180015210
FQKF010426119
[FQKF] soil metagenome; Soil
1
72
+
Glu
TTC
[ENA]
¢þ
>WENV181416491
OGCL01093246
[OGCL] hot springs metagenome; Hot spring water
101
173
+
Glu
TTC
[ENA]
¢þ
>W141152181
AXBP01000011
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
534304
534230
-
Glu
TTC
[ENA]
¡û
>W141152192
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
1584
1658
+
Glu
TTC
[ENA]
¡û
>W141152193
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
40161
40235
+
Glu
TTC
[ENA]
¡û
>WENV181847652
OGVY01050094
[OGVY] freshwater metagenome; freshwater
287
213
-
Glu
TTC
[ENA]
¢þ
>WENV183744723
PJUL01000110
[PJUL] feces metagenome; Chicken feces enriched on filter paper
17905
17977
+
Glu
TTC
[ENA]
¢þ
>C191018687
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1888363
1888435
+
Glu
TTC
-
¡û
>C191018688
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1926940
1927012
+
Glu
TTC
-
¡û
>C191018724
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
883825
883753
-
Glu
TTC
-
¡û
>W1810400062
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
6884409
6884337
-
Glu
TTC
[ENA]
¡û
>W1810400084
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
902059
901987
-
Glu
TTC
[ENA]
¡û
>W1810483265
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2903345
2903417
+
Glu
TTC
[ENA]
¡û
>W1810483268
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
3671379
3671451
+
Glu
TTC
[ENA]
¡û
>W1810503701
QBKI01000003
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
8817
8743
-
Glu
TTC
[ENA]
¡û
>W1810503722
QBKI01000012
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
25151
25225
+
Glu
TTC
[ENA]
¡û
>W1810503724
QBKI01000015
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
30408
30334
-
Glu
TTC
[ENA]
¡û
>W1810572880
QEKI01000013
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
112919
112993
+
Glu
TTC
[ENA]
¡û
>W1810789482
QRGR01000004
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
291177
291249
+
Glu
TTC
[ENA]
¡û
>W1810789512
QRGR01000033
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
28938
28866
-
Glu
TTC
[ENA]
¡û
>W1810917792
QWDE01000002
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
586093
586021
-
Glu
TTC
[ENA]
¡û
>C151055999
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4589346
4589418
+
Glu
TTC
[Ensembl]
¡û
>C151056000
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4737471
4737543
+
Glu
TTC
[Ensembl]
¡û
>C151056007
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
3429069
3428997
-
Glu
TTC
[Ensembl]
¡û
>W1710562170
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
97727
97801
+
Glu
TTC
[ENA]
¡û
>W1710562171
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
141332
141404
+
Glu
TTC
[ENA]
¡û
>W1710562178
FOOT01000013
Bacteroidota
Pontibacter chinhatensis [FOOT]
33247
33321
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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