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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350749 (36 seq.)
>A171002743
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1783515
1783588
+
Cys
GCA
-
¡û
>A171002751
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2444350
2444423
+
Cys
GCA
-
¡û
>A171002767
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1449665
1449592
-
Cys
GCA
-
¡û
>A171004535
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2177567
2177496
-
Cys
GCA
-
¡û
>A171004536
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2177417
2177346
-
Cys
GCA
-
¡û
>A171004585
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1864625
1864696
+
Cys
GCA
-
¡û
>A171004586
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1864775
1864846
+
Cys
GCA
-
¡û
>A171004717
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
51088
51159
+
Cys
GCA
-
¡û
>A171005348
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
46929
47000
+
Cys
GCA
-
¡û
>A171005358
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
546144
546215
+
Cys
GCA
-
¡û
>A171005385
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1577392
1577321
-
Cys
GCA
-
¡û
>WENV180276889
OBHV01003631
[OBHV] metagenome; water
122
51
-
Cys
GCA
[ENA]
¢þ
>WENV180345372
OBLN01000001
[OBLN] sediment metagenome; sediment
3374
3445
+
Cys
GCA
[ENA]
¢þ
>WENV170008285
AMZC01007710
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
14739
14668
-
Cys
GCA
[ENA]
¢þ
>WENV170008286
AMZC01007710
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
14589
14518
-
Cys
GCA
[ENA]
¢þ
>WENV170675873
LDZQ01001155
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3048
2977
-
Cys
GCA
[ENA]
¢þ
>WENV170676579
LDZS01001640
[LDZS] terrestrial metagenome; oil reservoir sample K3
3048
2977
-
Cys
GCA
[ENA]
¢þ
>WENV170690757
LFRM01359875
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6040
6111
+
Cys
GCA
[ENA]
¢þ
>W1910229840
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
55
126
+
Cys
GCA
[ENA]
¡û
>W1910229851
FOHQ01000004
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
2
73
+
Cys
GCA
[ENA]
¡û
>W1910229861
FOHQ01000007
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
55
126
+
Cys
GCA
[ENA]
¡û
>W1910229875
FOHQ01000010
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
2
73
+
Cys
GCA
[ENA]
¡û
>W1910230571
FOUJ01000002
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
468640
468569
-
Cys
GCA
[ENA]
¡û
>W1910230583
FOUJ01000005
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
45
116
+
Cys
GCA
[ENA]
¡û
>W1910230599
FOUJ01000018
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
243
172
-
Cys
GCA
[ENA]
¡û
>W1910230867
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
6475
6546
+
Cys
GCA
[ENA]
¡û
>W1910573173
JONQ01000007
Euryarchaeota
Methermicoccus shengliensis DSM 18856 [JONQ]
4518
4447
-
Cys
GCA
[ENA]
¡û
>W1910575242
JRHO01000002
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
190269
190198
-
Cys
GCA
[ENA]
¡û
>W1910575244
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
18
89
+
Cys
GCA
[ENA]
¡û
>W1910575258
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
5180
5251
+
Cys
GCA
[ENA]
¡û
>W1910661849
MBKP01000007
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
271
342
+
Cys
GCA
[ENA]
¡û
>W1911581839
PGGK01000028
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
230
159
-
Cys
GCA
[ENA]
¡û
>W1610612569
LGEW01000011
Euryarchaeota
Euryarchaeota archaeon 55_53 [LGEW]
3048
2977
-
Cys
GCA
[ENA]
¡û
>W1610613078
LGFK01000013
Euryarchaeota
Methanosarcinales archeaon 56_1174 [LGFK]
3048
2977
-
Cys
GCA
[ENA]
¡û
>W1610670272
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
3909
3980
+
Cys
GCA
[ENA]
¡û
>W1610919916
LSRV01000064
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
267
196
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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