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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350750 (79 seq.)
>A171003587
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1836168
1836239
+
Thr
CGT
-
¡û
>A171004518
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2597638
2597709
+
Thr
CGT
-
¡û
>A171004603
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1444387
1444316
-
Thr
CGT
-
¡û
>A171004740
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3732936
3732865
-
Thr
CGT
-
¡û
>A171004952
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3547681
3547610
-
Thr
CGT
-
¡û
>A171005002
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3511514
3511440
-
Thr
CGT
-
¡û
>A171005054
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3602662
3602591
-
Thr
CGT
-
¡û
>A171005096
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2792038
2792109
+
Thr
CGT
-
¡û
>A171005145
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1873227
1873298
+
Thr
CGT
-
¡û
>A171005192
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
439882
439953
+
Thr
CGT
-
¡û
>A171005263
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4435507
4435436
-
Thr
CGT
-
¡û
>WENV183515212
OMKS01051165
[OMKS] sediment metagenome; hot spring sediment
126
197
+
Thr
CGT
[ENA]
¢þ
>WENV170008101
AMZC01001653
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
6526
6455
-
Thr
CGT
[ENA]
¢þ
>At1374
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
719510
719581
+
Thr
CGT
[Ensembl]
¡û
>At1516
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2119638
2119709
+
Thr
CGT
[Ensembl]
¡û
>WENV170646075
JQGF01039074
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
45
116
+
Thr
CGT
[ENA]
¢þ
>WENV170684200
LFRM01025938
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
42798
42727
-
Thr
CGT
[ENA]
¢þ
>WENV170784226
MCHG01000166
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
631
559
-
Thr
CGT
[ENA]
¢þ
>W1910230887
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
303079
303008
-
Thr
CGT
[ENA]
¡û
>W1910569262
JJOR01000150
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
23891
23820
-
Thr
CGT
[ENA]
¡û
>W1910569308
JJOS01000080
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
23952
23881
-
Thr
CGT
[ENA]
¡û
>W1910569346
JJOT01000028
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
74717
74788
+
Thr
CGT
[ENA]
¡û
>W1910569385
JJOU01000039
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
8369
8440
+
Thr
CGT
[ENA]
¡û
>W1910569708
JJPA01000153
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
8350
8421
+
Thr
CGT
[ENA]
¡û
>W1910569748
JJPB01000074
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
44236
44307
+
Thr
CGT
[ENA]
¡û
>W1910569811
JJPC01000055
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
59046
59117
+
Thr
CGT
[ENA]
¡û
>W1910569874
JJPD01000165
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910569913
JJPE01000093
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910569955
JJPF01000042
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910569996
JJPG01000011
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570069
JJPH01000074
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570110
JJPI01000051
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
23808
23737
-
Thr
CGT
[ENA]
¡û
>W1910570170
JJPJ01000057
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570223
JJPK01000066
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570247
JJPL01000026
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
23968
23897
-
Thr
CGT
[ENA]
¡û
>W1910570318
JJPM01000162
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570360
JJPN01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
4288
4217
-
Thr
CGT
[ENA]
¡û
>W1910570446
JJPO01000159
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
722
651
-
Thr
CGT
[ENA]
¡û
>W1910570470
JJPP01000070
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
23983
23912
-
Thr
CGT
[ENA]
¡û
>W1910570508
JJPQ01000025
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
4273
4202
-
Thr
CGT
[ENA]
¡û
>W1910570560
JJPR01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
4273
4202
-
Thr
CGT
[ENA]
¡û
>W1910570646
JJPS01000220
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
8369
8440
+
Thr
CGT
[ENA]
¡û
>W1910570676
JJPT01000102
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
8326
8397
+
Thr
CGT
[ENA]
¡û
>W1910570777
JJPV01000059
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570838
JJPW01000072
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910570862
JJPX01000045
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
4274
4203
-
Thr
CGT
[ENA]
¡û
>W1910570943
JJPY01000101
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
88456
88385
-
Thr
CGT
[ENA]
¡û
>W1910570967
JJPZ01000032
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
4273
4202
-
Thr
CGT
[ENA]
¡û
>W1910571036
JJQA01000101
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
8368
8439
+
Thr
CGT
[ENA]
¡û
>W1910571084
JJQB01000101
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
8368
8439
+
Thr
CGT
[ENA]
¡û
>W1910571114
JJQC01000049
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
8368
8439
+
Thr
CGT
[ENA]
¡û
>W1910571184
JJQD01000155
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
72407
72336
-
Thr
CGT
[ENA]
¡û
>W1910571211
JJQE01000062
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910571342
JJQG01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
17752
17823
+
Thr
CGT
[ENA]
¡û
>W1910571403
JJQH01000200
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
8334
8405
+
Thr
CGT
[ENA]
¡û
>W1910571444
JJQI01000097
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
8369
8440
+
Thr
CGT
[ENA]
¡û
>W1910571507
JJQJ01000228
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
8308
8379
+
Thr
CGT
[ENA]
¡û
>W1910571540
JJQK01000227
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
860
789
-
Thr
CGT
[ENA]
¡û
>W1910571674
JJQM01000169
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910571682
JJQN01000032
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
723
652
-
Thr
CGT
[ENA]
¡û
>W1910571772
JJQO01000296
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910571826
JJQP01000171
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
5975
5904
-
Thr
CGT
[ENA]
¡û
>W1910571889
JJQQ01000160
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
8350
8421
+
Thr
CGT
[ENA]
¡û
>W1910571905
JJQR01000008
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
42422
42351
-
Thr
CGT
[ENA]
¡û
>W1910571990
JJQS01000103
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
8371
8442
+
Thr
CGT
[ENA]
¡û
>W1910572043
JJQT01000224
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
8213
8284
+
Thr
CGT
[ENA]
¡û
>W1910572144
JJQV01000105
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910572170
JJQW01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
8381
8452
+
Thr
CGT
[ENA]
¡û
>W1910572236
JJQX01000226
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
21412
21483
+
Thr
CGT
[ENA]
¡û
>W1910572338
JJQZ01000136
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
8372
8443
+
Thr
CGT
[ENA]
¡û
>W1910572391
JJRA01000134
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
8365
8436
+
Thr
CGT
[ENA]
¡û
>W1910572416
JJRB01000066
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
8370
8441
+
Thr
CGT
[ENA]
¡û
>W1910575041
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1436212
1436285
+
Thr
CGT
[ENA]
¡û
>W1910694766
MDTP02000005
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
43476
43405
-
Thr
CGT
[ENA]
¡û
>W1610003496
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
788877
788949
+
Thr
CGT
[ENA]
¡û
>W1610045102
BBBC01000031
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
8303
8374
+
Thr
CGT
[ENA]
¡û
>W1610046890
BBCW01000019
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
29662
29733
+
Thr
CGT
[ENA]
¡û
>W1610605083
LFRP01000003
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
42798
42727
-
Thr
CGT
[ENA]
¡û
>W1610670240
LKAZ01000028
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
47052
47123
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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