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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350817 (33 seq.)
>W1710809612
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
177986
177914
-
Met
CAT
[ENA]
¡û
>W1711055047
LRUH01000028
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
11736
11808
+
Met
CAT
[ENA]
¡û
>W1711088483
LSYY01000123
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
24030
24102
+
Met
CAT
[ENA]
¡û
>W1711466323
MJMG01000006
Alphaproteobacteria
Wolbachia pipientis [MJMG]
13687
13759
+
Met
CAT
[ENA]
¡û
>W1711502688
MKSX01000029
Alphaproteobacteria
Alphaproteobacteria bacterium 33-17 [MKSX]
29640
29566
-
Met
CAT
[ENA]
¡û
>W131052812
AMZJ01000049
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
6009
5937
-
Met
CAT
[ENA]
¡û
>W131242636
CAOH01000077
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
484
412
-
Met
CAT
[ENA]
¡û
>WENV181405234
OGCC01000261
[OGCC] insect metagenome; haemolymph
1589
1515
-
Met
CAT
[ENA]
¢þ
>WENV181405283
OGCD01000028
[OGCD] insect metagenome; haemolymph
5066
4992
-
Met
CAT
[ENA]
¢þ
>WENV181406110
OGCF01001274
[OGCF] insect metagenome; haemolymph
1037
963
-
Met
CAT
[ENA]
¢þ
>W141240236
CAGB01000146
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
480
408
-
Met
CAT
[ENA]
¡û
>C08011421
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
718708
718636
-
Met
CAT
[Ensembl]
¡û
>C191074319
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
177069
177141
+
Met
CAT
-
¡û
>C191123141
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
1143281
1143353
+
Met
CAT
-
¡û
>C191123175
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
1143284
1143356
+
Met
CAT
-
¡û
>W09113868
ABZA01000003
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
259752
259680
-
Met
CAT
[ENA]
¡û
>W1910213464
FMKF01000055
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
4298
4370
+
Met
CAT
[ENA]
¡û
>W1910794373
MRWX01000051
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
334
262
-
Met
CAT
[ENA]
¡û
>W1911412164
NWVH01000085
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
10830
10902
+
Met
CAT
[ENA]
¡û
>W1911412189
NWVI01000037
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
10830
10902
+
Met
CAT
[ENA]
¡û
>W1911545110
OUNE01000058
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
6529
6601
+
Met
CAT
[ENA]
¡û
>W1911545138
OUNF01000019
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
14424
14352
-
Met
CAT
[ENA]
¡û
>W1810758340
QPIP01000015
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
5465
5393
-
Met
CAT
[ENA]
¡û
>W1810758363
QPIP01000237
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
4759
4687
-
Met
CAT
[ENA]
¡û
>W1510562615
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
217806
217734
-
Met
CAT
[ENA]
¡û
>W1511183980
JMCJ01000944
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
1819
1747
-
Met
CAT
[ENA]
¡û
>W1511536222
JYPC01000032
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
2093
2021
-
Met
CAT
[ENA]
¡û
>W11145938
AERW01000156
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
366
294
-
Met
CAT
[ENA]
¡û
>W11185745
CACK01000120
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
6504
6576
+
Met
CAT
[ENA]
¡û
>C131009108
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
421867
421939
+
Met
CAT
[Ensembl]
¡û
>W1610673718
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
177986
177914
-
Met
CAT
[ENA]
¡û
>W1610896093
LRUH01000028
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
11736
11808
+
Met
CAT
[ENA]
¡û
>W1610923022
LSYY01000123
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
24030
24102
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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