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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350880 (13 seq.)
>W1710888858
LNAA01000017
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
73859
73788
-
Thr
CGT
[ENA]
¡û
>C025510
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
533046
533117
+
Thr
CGT
[Ensembl]
¡û
>WENV181414149
OGCL01000054
[OGCL] hot springs metagenome; Hot spring water
65126
65197
+
Thr
CGT
[ENA]
¢þ
>WENV181843447
OGVU01016017
[OGVU] freshwater metagenome; freshwater
716
787
+
Thr
CGT
[ENA]
¢þ
>ENV08001278
ABMV01188488
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
92
21
-
Thr
CGT
[ENA]
¡û
>C181030485
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1833112
1833039
-
Thr
CGT
-
¡û
>C191001203
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
810079
810150
+
Thr
CGT
-
¡û
>C191085215
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
971295
971366
+
Thr
CGT
-
¡û
>W141701082
JMKF01000043
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
1052
981
-
Thr
CGT
[ENA]
¡û
>W1910976639
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
17911
17982
+
Thr
CGT
[ENA]
¡û
>SRA1001292
SRR001063.11023
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
92
21
-
Thr
CGT
[SRA]
>C161002767
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
701357
701428
+
Thr
CGT
[Ensembl]
¡û
>W1610749236
LNAA01000017
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
73859
73788
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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