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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351510 (20 seq.)
>W1711229616
LXYP01000014
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
50631
50557
-
Val
GAC
[ENA]
¡û
>WENV181322797
OFKU01022420
[OFKU] marine metagenome; sea ice
241
315
+
Val
GAC
[ENA]
¢þ
>WENV181323188
OFKW01024910
[OFKW] marine metagenome; sea ice
154
80
-
Val
GAC
[ENA]
¢þ
>WENV182543993
OJBD01007568
[OJBD] seawater metagenome; Sea water
233
159
-
Val
GAC
[ENA]
¢þ
>WENV182558911
OJDN01013768
[OJDN] seawater metagenome; Sea water
81
7
-
Val
GAC
[ENA]
¢þ
>WENV182567222
OJEN01017595
[OJEN] seawater metagenome; Sea water
366
440
+
Val
GAC
[ENA]
¢þ
>WENV182585779
OJHI01009483
[OJHI] seawater metagenome; Sea water
411
485
+
Val
GAC
[ENA]
¢þ
>WENV183614691
OODW01031724
[OODW] marine metagenome; sea ice
402
328
-
Val
GAC
[ENA]
¢þ
>WENV183615126
OOEA01065507
[OOEA] marine metagenome; sea ice
98
172
+
Val
GAC
[ENA]
¢þ
>C181062150
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
2856063
2855989
-
Val
GAC
-
¡û
>C181068279
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
1761818
1761744
-
Val
GAC
-
¡û
>C181220305
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
736156
736230
+
Val
GAC
-
¡û
>C181220371
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1839388
1839314
-
Val
GAC
-
¡û
>W141700095
JMIV01000002
Alphaproteobacteria
Erythrobacter sp. JL475 [JMIV]
790294
790368
+
Val
GAC
[ENA]
¡û
>W1911532510
OGVD01000002
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
119921
119847
-
Val
GAC
[ENA]
¡û
>C161073964
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2938651
2938725
+
Val
GAC
[Ensembl]
¡û
>C161092436
CP015963
Alphaproteobacteria
Altererythrobacter ishigakiensis NBRC 107699 [CP015963]
1457247
1457173
-
Val
GAC
-
¡û
>W1611013486
LXYP01000014
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
50631
50557
-
Val
GAC
[ENA]
¡û
>WENV078496
AAGA01023736
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
384
460
+
Val
GAC
[ENA]
>W1710593889
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
189638
189712
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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