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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351605 (23 seq.)
>C025655
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1580425
1580499
+
Arg
CCT
-
¡û
>C025795
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1224083
1224009
-
Arg
CCT
[Ensembl]
¡û
>WENV181407860
OGCH01000139
[OGCH] hot springs metagenome; hot springs
5390
5316
-
Arg
CCT
[ENA]
¢þ
>C08010895
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1284332
1284406
+
Arg
CCT
[Ensembl]
¡û
>WENV170676766
LDZS01002191
[LDZS] terrestrial metagenome; oil reservoir sample K3
808
882
+
Arg
CCT
[ENA]
¢þ
>W09107432
ABIJ01000007
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
73597
73523
-
Arg
CCT
[ENA]
¡û
>W09112220
ABXR01000011
Thermotogota
Marinitoga piezophila KA3 [ABXR]
75932
75858
-
Arg
CCT
[ENA]
¡û
>W1910635475
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
53571
53497
-
Arg
CCT
[ENA]
¡û
>C151004327
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1222412
1222338
-
Arg
CCT
[Ensembl]
¡û
>C151074615
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1570413
1570487
+
Arg
CCT
[Ensembl]
¡û
>W10105852
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60400
60474
+
Arg
CCT
[ENA]
¡û
>W11108172
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60400
60474
+
Arg
CCT
[ENA]
¡û
>W11180799
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
227940
228014
+
Arg
CCT
[ENA]
¡û
>W1610540326
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52876
52802
-
Arg
CCT
[ENA]
¡û
>W1610540383
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58397
58471
+
Arg
CCT
[ENA]
¡û
>W1610540418
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52665
52591
-
Arg
CCT
[ENA]
¡û
>W1610540498
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49811
49885
+
Arg
CCT
[ENA]
¡û
>W1610613156
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
808
882
+
Arg
CCT
[ENA]
¡û
>W1710643347
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52876
52802
-
Arg
CCT
[ENA]
¡û
>W1710643404
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58397
58471
+
Arg
CCT
[ENA]
¡û
>W1710643439
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52665
52591
-
Arg
CCT
[ENA]
¡û
>W1710643519
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49811
49885
+
Arg
CCT
[ENA]
¡û
>W1710734363
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
808
882
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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