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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351617 (25 seq.)
>A171000946
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2350717
2350645
-
Asp
GTC
-
¡û
>A171002035
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2442638
2442565
-
Asp
GTC
-
¡û
>A171002238
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
262057
262130
+
Asp
GTC
-
¡û
>A171005846
CP010834
Euryarchaeota
Methanobrevibacter sp. YE315 [CP010834]
1891611
1891539
-
Asp
GTC
-
¡û
>A171006561
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1547659
1547587
-
Asp
GTC
-
¡û
>A171007650
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
266514
266587
+
Asp
GTC
-
¡û
>WENV181229911
OFEK01000116
[OFEK] activated sludge metagenome; Anaerobic digester
14614
14687
+
Asp
GTC
[ENA]
¢þ
>WENV181638714
OGNC01009364
[OGNC] metagenome; Human gut stool
2651
2579
-
Asp
GTC
[ENA]
¢þ
>WENV182884045
OKSC01000004
[OKSC] human gut metagenome; faeces
265031
265103
+
Asp
GTC
[ENA]
¢þ
>WENV170670882
LAHU01003268
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
6411
6338
-
Asp
GTC
[ENA]
¢þ
>W1910226613
FMXB01000003
Euryarchaeota
Methanobrevibacter millerae DSM 16643 [FMXB]
180608
180680
+
Asp
GTC
[ENA]
¡û
>W1910229674
FOAK01000011
Euryarchaeota
Methanobrevibacter gottschalkii DSM 11978 [FOAK]
38633
38561
-
Asp
GTC
[ENA]
¡û
>W1910230529
FOTL01000002
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
91061
90989
-
Asp
GTC
[ENA]
¡û
>W1910575086
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
105906
105979
+
Asp
GTC
[ENA]
¡û
>W1910583638
JXMW01000028
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
40034
40107
+
Asp
GTC
[ENA]
¡û
>W1910655419
LZPL01000021
Euryarchaeota
Methanobrevibacter sp. A27 [LZPL]
3845
3917
+
Asp
GTC
[ENA]
¡û
>W1910832138
MZGS01000023
Euryarchaeota
Methanobrevibacter thaueri DSM 11995 [MZGS]
160126
160054
-
Asp
GTC
[ENA]
¡û
>W1910832175
MZGU01000004
Euryarchaeota
Methanobrevibacter woesei DSM 11979 [MZGU]
260485
260558
+
Asp
GTC
[ENA]
¡û
>W1910938908
NIZT01000060
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
777
704
-
Asp
GTC
[ENA]
¡û
>ENV09002643
ADGC01010726
Wallaby gut metagenome MeugComb_C1
335
407
+
Asp
GTC
[ENA]
¡û
>W1610049176
BBET01000004
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
3448
3521
+
Asp
GTC
[ENA]
¡û
>W1610083226
CBVX010000002
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
44234
44307
+
Asp
GTC
[ENA]
¡û
>W1610990669
LWMT01000066
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
17899
17826
-
Asp
GTC
[ENA]
¡û
>W1610990748
LWMV01000212
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
9508
9436
-
Asp
GTC
[ENA]
¡û
>W1610990779
LWMW01000126
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
57632
57559
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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