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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351789 (19 seq.)
>W1710806103
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
687668
687594
-
Val
GAC
[ENA]
¡û
>WENV180043580
LQAI01001159
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1039
1113
+
Val
GAC
[ENA]
¢þ
>WENV180044000
LQAJ01000193
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
22152
22078
-
Val
GAC
[ENA]
¢þ
>WENV183707103
PDWI01006697
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7184
7110
-
Val
GAC
[ENA]
¢þ
>WENV183747066
PPCM01000158
[PPCM] marine sediment metagenome; marine sediment
14377
14451
+
Val
GAC
[ENA]
¢þ
>WENV170419774
CEUM01137570
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11378
11304
-
Val
GAC
[ENA]
¢þ
>WENV170438828
CEUU01252962
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1249
1323
+
Val
GAC
[ENA]
¢þ
>WENV170441039
CEUV01144953
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2677
2603
-
Val
GAC
[ENA]
¢þ
>WENV170470322
CEVF01242090
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
563
489
-
Val
GAC
[ENA]
¢þ
>WENV170894295
MDTD01063471
[MDTD] marine metagenome; seawater
16993
16919
-
Val
GAC
[ENA]
¢þ
>C181226986
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3916232
3916306
+
Val
GAC
-
¡û
>W1911738033
QTZO01000030
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
17460
17534
+
Val
GAC
[ENA]
¡û
>W10111382
ADDI01000013
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
64028
63954
-
Val
GAC
[ENA]
¡û
>C11106871
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2226664
2226590
-
Val
GAC
[Ensembl]
¡û
>W11114325
ADDI01000013
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
64028
63954
-
Val
GAC
[ENA]
¡û
>W11149128
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
189870
189796
-
Val
GAC
[ENA]
¡û
>C121009003
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1199504
1199430
-
Val
GAC
[Ensembl]
¡û
>C161068245
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1890039
1890113
+
Val
GAC
[Ensembl]
¡û
>C131017934
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3377226
3377300
+
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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