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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352369 (73 seq.)
>W1711107661
LTSZ01000192
Betaproteobacteria
Achromobacter xylosoxidans HMSC057D05 [LTSZ]
4840
4765
-
His
GTG
[ENA]
¡û
>W1711187365
LWPK01000116
Betaproteobacteria
Achromobacter xylosoxidans [LWPK]
15636
15711
+
His
GTG
[ENA]
¡û
>W1711466647
MJMN01000064
Betaproteobacteria
Achromobacter xylosoxidans [MJMN]
116594
116669
+
His
GTG
[ENA]
¡û
>W1711956854
NBTQ01000001
Betaproteobacteria
Bordetella pertussis [NBTQ]
1740068
1740143
+
His
GTG
[ENA]
¡û
>W1712110439
NJIF01000004
Betaproteobacteria
Achromobacter insolitus [NJIF]
439128
439053
-
His
GTG
[ENA]
¡û
>C171008603
CP011184
Betaproteobacteria
Bordetella pertussis H579 [CP011184]
2263214
2263139
-
His
GTG
-
¡û
>C171009405
CP011200
Betaproteobacteria
Bordetella pertussis I373 [CP011200]
2284621
2284546
-
His
GTG
-
¡û
>C171009606
CP011204
Betaproteobacteria
Bordetella pertussis I752 [CP011204]
2319857
2319782
-
His
GTG
-
¡û
>C171011833
CP011704
Betaproteobacteria
Bordetella pertussis H787 [CP011704]
2263236
2263161
-
His
GTG
-
¡û
>C171013410
CP011736
Betaproteobacteria
Bordetella pertussis I380 [CP011736]
2003768
2003843
+
His
GTG
-
¡û
>C171015852
CP012086
Betaproteobacteria
Bordetella pertussis J013 [CP012086]
2233160
2233085
-
His
GTG
-
¡û
>C171016371
CP012134
Betaproteobacteria
Bordetella pertussis I464 [CP012134]
2234208
2234133
-
His
GTG
-
¡û
>C171029213
CP013900
Betaproteobacteria
Bordetella pertussis J174 [CP013900]
2233337
2233262
-
His
GTG
-
¡û
>C171029348
CP013903
Betaproteobacteria
Bordetella pertussis J206 [CP013903]
1794403
1794478
+
His
GTG
-
¡û
>C171040957
CP015760
Betaproteobacteria
Bordetella pertussis VA-175 [CP015760]
2234205
2234130
-
His
GTG
-
¡û
>C171061866
CP017402
Betaproteobacteria
Bordetella pertussis J445 [CP017402]
2340731
2340656
-
His
GTG
-
¡û
>WENV180746229
ODHM01020654
[ODHM] human metagenome; G_DNA_Buccal mucosa
271
346
+
His
GTG
[ENA]
¢þ
>WENV181080542
OEAS01055148
[OEAS] human metagenome; G_DNA_Supragingival plaque
565
640
+
His
GTG
[ENA]
¢þ
>WENV181121056
OEFL01000266
[OEFL] human metagenome; G_DNA_Supragingival plaque
14556
14481
-
His
GTG
[ENA]
¢þ
>WENV181312131
OFJB01046762
[OFJB] sludge metagenome; sludge
19
94
+
His
GTG
[ENA]
¢þ
>W141164295
AXRV02000091
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0008 [AXRV]
35337
35412
+
His
GTG
[ENA]
¡û
>W141164372
AXRX02000036
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0019 [AXRX]
35632
35707
+
His
GTG
[ENA]
¡û
>W141164459
AXRZ02000023
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0017 [AXRZ]
39329
39404
+
His
GTG
[ENA]
¡û
>W141164570
AXSB02000035
Betaproteobacteria
Bordetella pertussis CHLA-26 [AXSB]
91299
91374
+
His
GTG
[ENA]
¡û
>W141164900
AXSI02000058
Betaproteobacteria
Bordetella pertussis I002 [AXSI]
35420
35495
+
His
GTG
[ENA]
¡û
>WENV181840246
OGVO01058369
[OGVO] freshwater metagenome; freshwater
149
74
-
His
GTG
[ENA]
¢þ
>WENV170576584
FRDC01000988
[FRDC] freshwater metagenome; water
7726
7801
+
His
GTG
[ENA]
¢þ
>WENV170784453
MCND01000121
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
31989
31914
-
His
GTG
[ENA]
¢þ
>C181022538
CP016965
Betaproteobacteria
Bordetella pertussis F013 [CP016965]
1789249
1789324
+
His
GTG
-
¡û
>C181024431
CP017167
Betaproteobacteria
Bordetella pertussis J308 [CP017167]
2313972
2313897
-
His
GTG
-
¡û
>C181028897
CP017923
Betaproteobacteria
Bordetella pertussis J148 [CP017923]
1772635
1772710
+
His
GTG
-
¡û
>C181029848
CP018037
Betaproteobacteria
Bordetella pertussis J094 [CP018037]
2281415
2281340
-
His
GTG
-
¡û
>C181045472
CP020645
Betaproteobacteria
Bordetella bronchiseptica I943 [CP020645]
1719784
1719859
+
His
GTG
-
¡û
>C181045790
CP020651
Betaproteobacteria
Bordetella bronchiseptica D755 [CP020651]
1732612
1732687
+
His
GTG
-
¡û
>C181046872
CP020818
Betaproteobacteria
Bordetella bronchiseptica F709 [CP020818]
1701479
1701554
+
His
GTG
-
¡û
>C191011049
CP014211
Betaproteobacteria
Bordetella pertussis J377 [CP014211]
2286215
2286140
-
His
GTG
-
¡û
>C191032643
CP025353
Betaproteobacteria
Bordetella pertussis J024 [CP025353]
1795449
1795524
+
His
GTG
-
¡û
>C191033365
CP025367
Betaproteobacteria
Bordetella pertussis H677 [CP025367]
2266947
2266872
-
His
GTG
-
¡û
>C191036227
CP025528
Betaproteobacteria
Bordetella pertussis D869 [CP025528]
2021292
2021367
+
His
GTG
-
¡û
>C191042790
CP026438
Betaproteobacteria
Bordetella pertussis J332 [CP026438]
2318168
2318093
-
His
GTG
-
¡û
>C191044193
CP026466
Betaproteobacteria
Bordetella pertussis J402 [CP026466]
2285166
2285091
-
His
GTG
-
¡û
>W141521033
JGWG01000291
Betaproteobacteria
Bordetella bronchiseptica 00-P-2730 [JGWG]
112138
112213
+
His
GTG
[ENA]
¡û
>C191046964
CP026883
Betaproteobacteria
Bordetella pertussis J702 [CP026883]
2260928
2260853
-
His
GTG
-
¡û
>W141521692
JGWU01000016
Betaproteobacteria
Bordetella bronchiseptica D989 [JGWU]
6112
6187
+
His
GTG
[ENA]
¡û
>W141521919
JGWY01000077
Betaproteobacteria
Bordetella bronchiseptica E013 [JGWY]
10450
10375
-
His
GTG
[ENA]
¡û
>C191206819
LR134326
Betaproteobacteria
Bordetella bronchiseptica NCTC10543 [LR134326]
3422704
3422629
-
His
GTG
-
¡û
>W1910890872
NEVO01000012
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
62621
62696
+
His
GTG
[ENA]
¡û
>W1911178093
NQLY01000011
Betaproteobacteria
Bordetella bronchiseptica SH02 [NQLY]
41061
40986
-
His
GTG
[ENA]
¡û
>W1911239372
NSDN01000014
Betaproteobacteria
Bordetella bronchiseptica SH04 [NSDN]
116972
117047
+
His
GTG
[ENA]
¡û
>W1810111101
PHIK01000015
Betaproteobacteria
Achromobacter ruhlandii Ar38 [PHIK]
180143
180068
-
His
GTG
[ENA]
¡û
>W1510119320
CFKX01000009
Betaproteobacteria
Bordetella pertussis B121 [CFKX]
3765
3690
-
His
GTG
[ENA]
¡û
>W1510135240
CFXQ01000117
Betaproteobacteria
Bordetella pertussis B007 [CFXQ]
3800
3725
-
His
GTG
[ENA]
¡û
>W1510137671
CFZQ01000006
Betaproteobacteria
Bordetella pertussis B335 [CFZQ]
4837
4762
-
His
GTG
[ENA]
¡û
>W1510144390
CGFA01000124
Betaproteobacteria
Bordetella pertussis B316 [CGFA]
3777
3702
-
His
GTG
[ENA]
¡û
>W1510538952
CSOP01000004
Betaproteobacteria
Bordetella pertussis B026 [CSOP]
3786
3711
-
His
GTG
[ENA]
¡û
>W1510539546
CSPB01000093
Betaproteobacteria
Bordetella pertussis B113 [CSPB]
5165
5240
+
His
GTG
[ENA]
¡û
>W1510539630
CSPD01000092
Betaproteobacteria
Bordetella pertussis B061 [CSPD]
3756
3831
+
His
GTG
[ENA]
¡û
>W1510542597
CSRM01000009
Betaproteobacteria
Bordetella pertussis B070 [CSRM]
3789
3714
-
His
GTG
[ENA]
¡û
>W1510543373
CSSD01000002
Betaproteobacteria
Bordetella pertussis B093 [CSSD]
33093
33168
+
His
GTG
[ENA]
¡û
>W1510639281
CVJE01000228
Betaproteobacteria
Bordetella pertussis B302 [CVJE]
3799
3724
-
His
GTG
[ENA]
¡û
>W1510639687
CVJN01000069
Betaproteobacteria
Bordetella pertussis B307 [CVJN]
3727
3802
+
His
GTG
[ENA]
¡û
>W1511642045
LDVJ01000225
Betaproteobacteria
Achromobacter xylosoxidans A-8 [LDVJ]
7280
7205
-
His
GTG
[ENA]
¡û
>W1511686602
LFUE01000027
Betaproteobacteria
Bordetella pertussis BpC90 [LFUE]
3793
3718
-
His
GTG
[ENA]
¡û
>C161030313
CP010966
Betaproteobacteria
Bordetella pertussis I979 [CP010966]
2318175
2318100
-
His
GTG
-
¡û
>C161032960
CP011255
Betaproteobacteria
Bordetella pertussis I344 [CP011255]
2112753
2112828
+
His
GTG
-
¡û
>C161066294
CP014065
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_162 [CP014065]
3467009
3466934
-
His
GTG
-
¡û
>C161067272
CP014153
Betaproteobacteria
Bordetella pertussis FDAARGOS_179 [CP014153]
576481
576556
+
His
GTG
-
¡û
>C161106126
LN831029
Betaproteobacteria
Achromobacter xylosoxidans NCTC10807 [LN831029]
5008581
5008506
-
His
GTG
[Ensembl]
¡û
>W1610094655
CYTX01000014
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
4525
4450
-
His
GTG
[ENA]
¡û
>W1610447662
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
108701
108626
-
His
GTG
[ENA]
¡û
>W1610990814
LWPK01000116
Betaproteobacteria
Achromobacter xylosoxidans [LWPK]
15636
15711
+
His
GTG
[ENA]
¡û
>W1710097615
CYTX01000014
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
4525
4450
-
His
GTG
[ENA]
¡û
>W1710447290
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
108701
108626
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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