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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352375 (75 seq.)
>W1710785495
LJHX01000075
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
3555
3630
+
Ala
TGC
[ENA]
¡û
>W1710796663
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
426442
426517
+
Ala
TGC
[ENA]
¡û
>W1711188815
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3546
3471
-
Ala
TGC
[ENA]
¡û
>W1711505335
MKVK01000023
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
2333
2408
+
Ala
TGC
[ENA]
¡û
>C171115137
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1399290
1399365
+
Ala
TGC
-
¡û
>C171115140
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1416135
1416210
+
Ala
TGC
-
¡û
>C171115146
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1698695
1698770
+
Ala
TGC
-
¡û
>W131046835
AMSR01000039
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
2168
2243
+
Ala
TGC
[ENA]
¡û
>W131216109
ATVO01000004
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
90997
90922
-
Ala
TGC
[ENA]
¡û
>W131237393
AUOJ01000135
Alphaproteobacteria
Bradyrhizobium sp. JGI 0001002-A22 [AUOJ]
959
1034
+
Ala
TGC
[ENA]
¡û
>WENV180304601
OBJI01166232
[OBJI] soil metagenome; soil
58
133
+
Ala
TGC
[ENA]
¢þ
>WENV180311722
OBJT01499924
[OBJT] soil metagenome; soil
18
93
+
Ala
TGC
[ENA]
¢þ
>WENV181162721
OEIO01008862
[OEIO] marine metagenome; sea ice
735
660
-
Ala
TGC
[ENA]
¢þ
>WENV181163829
OEIQ01284598
[OEIQ] soil metagenome; soil
53
128
+
Ala
TGC
[ENA]
¢þ
>WENV181233615
OFET01000016
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
350110
350035
-
Ala
TGC
[ENA]
¢þ
>WENV181308467
OFIS01027275
[OFIS] sludge metagenome; sludge
237
162
-
Ala
TGC
[ENA]
¢þ
>WENV181312212
OFJB01055776
[OFJB] sludge metagenome; sludge
489
414
-
Ala
TGC
[ENA]
¢þ
>WENV183627336
OOGL01000586
[OOGL] marine metagenome; sea ice
987
1062
+
Ala
TGC
[ENA]
¢þ
>WENV183678949
ORJL011942992
[ORJL] groundwater metagenome; groundwater
142
67
-
Ala
TGC
[ENA]
¢þ
>WENV183680659
ORMF010208991
[ORMF] groundwater metagenome; groundwater
840
765
-
Ala
TGC
[ENA]
¢þ
>WENV183684816
ORMF010760579
[ORMF] groundwater metagenome; groundwater
348
273
-
Ala
TGC
[ENA]
¢þ
>WENV183729190
PJTQ01009677
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
359
434
+
Ala
TGC
[ENA]
¢þ
>WENV183740790
PJUF01010357
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
361
436
+
Ala
TGC
[ENA]
¢þ
>WENV170002440
AGTN01029961
[AGTN] bioreactor metagenome; poplar biomass
2864
2939
+
Ala
TGC
[ENA]
¢þ
>WENV170003343
AGTN01305540
[AGTN] bioreactor metagenome; poplar biomass
599
674
+
Ala
TGC
[ENA]
¢þ
>WENV170019719
BBPE01000220
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
21732
21807
+
Ala
TGC
[ENA]
¢þ
>WENV170649088
JRHI01006032
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
3689
3764
+
Ala
TGC
[ENA]
¢þ
>WENV170980952
MWVT01010529
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1153
1228
+
Ala
TGC
[ENA]
¢þ
>WENV170986250
MWVX01024316
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
263
338
+
Ala
TGC
[ENA]
¢þ
>WENV170987418
MWVX01188424
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
182
107
-
Ala
TGC
[ENA]
¢þ
>WENV170988252
MWVX01427361
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
32
107
+
Ala
TGC
[ENA]
¢þ
>WENV170988257
MWVX01427867
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
242
167
-
Ala
TGC
[ENA]
¢þ
>WENV170994094
MWWD01011580
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
392
467
+
Ala
TGC
[ENA]
¢þ
>WENV170994135
MWWD01017586
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
439
514
+
Ala
TGC
[ENA]
¢þ
>WENV170997074
MWWG01027568
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
217
142
-
Ala
TGC
[ENA]
¢þ
>WENV170997571
MWWG01190634
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
283
208
-
Ala
TGC
[ENA]
¢þ
>C181088924
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1923660
1923585
-
Ala
TGC
-
¡û
>C181088927
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1909808
1909733
-
Ala
TGC
-
¡û
>C181088933
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1624659
1624584
-
Ala
TGC
-
¡û
>C181155059
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
258841
258916
+
Ala
TGC
-
¡û
>C181155088
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2814657
2814582
-
Ala
TGC
-
¡û
>C181155109
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
258841
258916
+
Ala
TGC
-
¡û
>C181155138
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2814657
2814582
-
Ala
TGC
-
¡û
>C191015696
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
2272968
2272893
-
Ala
TGC
-
¡û
>C191145649
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1915267
1915192
-
Ala
TGC
-
¡û
>C191145652
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1901415
1901340
-
Ala
TGC
-
¡û
>C191145658
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1616259
1616184
-
Ala
TGC
-
¡û
>W141564466
JIAU01000005
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
172502
172577
+
Ala
TGC
[ENA]
¡û
>W1910182435
BJMW01000034
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
3550
3475
-
Ala
TGC
[ENA]
¡û
>W1910182480
BJMX01000026
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
3678
3603
-
Ala
TGC
[ENA]
¡û
>C141008798
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1485110
1485185
+
Ala
TGC
[Ensembl]
¡û
>C141008804
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1769301
1769376
+
Ala
TGC
[Ensembl]
¡û
>W1910822165
MWMO01000013
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
54495
54570
+
Ala
TGC
[ENA]
¡û
>W1911765789
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
1218919
1218994
+
Ala
TGC
[ENA]
¡û
>W1810109405
PHHF01000058
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
95475
95400
-
Ala
TGC
[ENA]
¡û
>SRA1004282
SRR002328.245309
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
135
210
+
Ala
TGC
[SRA]
>W1810538548
QDFY01000007
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
96936
97011
+
Ala
TGC
[ENA]
¡û
>W1810579410
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1256937
1256862
-
Ala
TGC
[ENA]
¡û
>C151004597
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1484197
1484272
+
Ala
TGC
[Ensembl]
¡û
>C151004600
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1498038
1498113
+
Ala
TGC
[Ensembl]
¡û
>C151004606
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1782282
1782357
+
Ala
TGC
[Ensembl]
¡û
>C11124221
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1469301
1469376
+
Ala
TGC
[Ensembl]
¡û
>C11124224
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1491048
1491123
+
Ala
TGC
[Ensembl]
¡û
>C11124230
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1778241
1778316
+
Ala
TGC
[Ensembl]
¡û
>W11151089
AEWJ01000057
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
3429
3354
-
Ala
TGC
[ENA]
¡û
>C121003144
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1500063
1500138
+
Ala
TGC
[Ensembl]
¡û
>C121003150
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1786679
1786754
+
Ala
TGC
[Ensembl]
¡û
>W1610649301
LJHX01000075
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
3555
3630
+
Ala
TGC
[ENA]
¡û
>W1610660620
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
426442
426517
+
Ala
TGC
[ENA]
¡û
>W1610990934
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3546
3471
-
Ala
TGC
[ENA]
¡û
>W1611004962
LXQM01000003
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
68085
68010
-
Ala
TGC
[ENA]
¡û
>ENV000461
AF422569
Environmental sample from ENV division of INSDC
328
403
+
Ala
TGC
[ENA]
>ENV001330
AY713454
Environmental sample from ENV division of INSDC
273
348
+
Ala
TGC
[ENA]
>ENV004028
DQ190812
Environmental sample from ENV division of INSDC
1
76
+
Ala
TGC
[ENA]
>ENV004266
DQ491463
Environmental sample from ENV division of INSDC
478
553
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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