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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352571 (36 seq.)
>W1711484248
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
475488
475562
+
Gln
TTG
[ENA]
¡û
>W1711484255
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
1054516
1054590
+
Gln
TTG
[ENA]
¡û
>W1711484302
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
311
385
+
Gln
TTG
[ENA]
¡û
>C171088976
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013156
2013082
-
Gln
TTG
-
¡û
>C171088984
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1464422
1464348
-
Gln
TTG
-
¡û
>C171088991
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1115885
1115811
-
Gln
TTG
-
¡û
>WENV180043763
LQAI01017314
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
48
122
+
Gln
TTG
[ENA]
¢þ
>WENV180044149
LQAJ01008698
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
608
682
+
Gln
TTG
[ENA]
¢þ
>WENV180381190
OBOR01162098
[OBOR] marine metagenome; ENVO 00002227
328
402
+
Gln
TTG
[ENA]
¢þ
>WENV170598246
FUWD010030308
[FUWD] metagenome; unknown
42
116
+
Gln
TTG
[ENA]
¢þ
>WENV170614916
FUWD012844302
[FUWD] metagenome; unknown
474
400
-
Gln
TTG
[ENA]
¢þ
>WENV170615394
FUWD012856617
[FUWD] metagenome; unknown
760
686
-
Gln
TTG
[ENA]
¢þ
>WENV170615396
FUWD012856618
[FUWD] metagenome; unknown
385
311
-
Gln
TTG
[ENA]
¢þ
>WENV170615399
FUWD012856619
[FUWD] metagenome; unknown
244
170
-
Gln
TTG
[ENA]
¢þ
>WENV170646419
JQGR01003097
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
723
649
-
Gln
TTG
[ENA]
¢þ
>WENV170704245
LLEJ01000528
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4720
4794
+
Gln
TTG
[ENA]
¢þ
>WENV170704294
LLEJ01002099
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1597
1523
-
Gln
TTG
[ENA]
¢þ
>WENV170704938
LLEN01018754
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
51
125
+
Gln
TTG
[ENA]
¢þ
>WENV170924833
MDTG01072539
[MDTG] marine metagenome; seawater
2758
2832
+
Gln
TTG
[ENA]
¢þ
>WENV170929925
MDTG01158625
[MDTG] marine metagenome; seawater
16352
16278
-
Gln
TTG
[ENA]
¢þ
>WENV170932362
MDTG01201327
[MDTG] marine metagenome; seawater
16
90
+
Gln
TTG
[ENA]
¢þ
>WENV170932363
MDTG01201327
[MDTG] marine metagenome; seawater
4202
4276
+
Gln
TTG
[ENA]
¢þ
>WENV170934857
MDTG01246115
[MDTG] marine metagenome; seawater
85
11
-
Gln
TTG
[ENA]
¢þ
>WENV170941834
MDTG01367314
[MDTG] marine metagenome; seawater
11234
11160
-
Gln
TTG
[ENA]
¢þ
>C191084640
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
198465
198539
+
Gln
TTG
-
¡û
>C191084671
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1363225
1363151
-
Gln
TTG
-
¡û
>C191084675
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1362779
1362705
-
Gln
TTG
-
¡û
>W1911426365
NXIH01000002
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
256233
256159
-
Gln
TTG
[ENA]
¡û
>W1911426446
NXII01000027
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
3519
3593
+
Gln
TTG
[ENA]
¡û
>W1911717864
QQTC01000039
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
1256
1330
+
Gln
TTG
[ENA]
¡û
>W1810295904
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
43016
42942
-
Gln
TTG
[ENA]
¡û
>W1810295908
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
42567
42493
-
Gln
TTG
[ENA]
¡û
>W1810295933
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3023
2949
-
Gln
TTG
[ENA]
¡û
>W1810462549
PZYW01000001
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
196237
196163
-
Gln
TTG
[ENA]
¡û
>W1810462556
PZYW01000002
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
332465
332539
+
Gln
TTG
[ENA]
¡û
>C11101042
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
1580477
1580551
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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