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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353123 (11 seq.)
>WENV180573225
OCLV01000094
[OCLV] marine metagenome; marine
1272
1197
-
Val
TAC
[ENA]
¡û
>WENV183624070
OOGB01019968
[OOGB] marine metagenome; sea ice
190
265
+
Val
TAC
[ENA]
¡û
>WENV183675974
ORJL011575130
[ORJL] groundwater metagenome; groundwater
71247
71174
-
Val
TAC
[ENA]
¡û
>WENV183696276
ORMF012530879
[ORMF] groundwater metagenome; groundwater
105
178
+
Val
TAC
[ENA]
¡û
>WENV183802411
PVBE010757426
[PVBE] marine metagenome; water
904
979
+
Val
TAC
[ENA]
¡û
>WENV183805115
PVBE010988578
[PVBE] marine metagenome; water
612
687
+
Val
TAC
[ENA]
¡û
>WENV170600423
FUWD010124530
[FUWD] metagenome; unknown
174
99
-
Val
TAC
[ENA]
¡û
>WENV170739181
LULP01034144
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
481
406
-
Val
TAC
[ENA]
¡û
>WENV170764909
LWDU01034062
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3956
3881
-
Val
TAC
[ENA]
¡û
>WENV170921052
MDTG01007353
[MDTG] marine metagenome; seawater
2037
1962
-
Val
TAC
[ENA]
¡û
>WENV170949837
MEHZ011456717
[MEHZ] marine metagenome; marine surface water
146
71
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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